miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28482_hsa-mir-155:mirbase
Length = 65
Score = 119 bits (60), Expect = 2e-28
Identities = 63/64 (98%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttgcctccaactgactcctacatattagcatta 61
Query: 61 acag 64
||||
Sbjct: 62 acag 65
>27766_mml-mir-155:mirbase
Length = 65
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatta 61
Query: 61 acag 64
||||
Sbjct: 62 acag 65
>30864_ppy-mir-155:mirbase
Length = 65
Score = 103 bits (52), Expect = 1e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacctccaactgactcctacatgttagcatta 61
Query: 61 acag 64
||||
Sbjct: 62 acag 65
>25973_gga-mir-155:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 1e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct: 1 tgttaatgctaatcgtgataggggtttttacctctgaatgactcctacatgttagcatta 60
Query: 61 aca 63
|||
Sbjct: 61 aca 63
>26730_cfa-mir-155:mirbase
Length = 61
Score = 89.7 bits (45), Expect = 2e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 3 ttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcattaac 62
||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||||
Sbjct: 1 ttaatgctaatcgtgataggggtttttacctccgactgactcctacatgttagcattaac 60
Query: 63 a 63
|
Sbjct: 61 a 61
>27059_eca-mir-155:mirbase
Length = 65
Score = 87.7 bits (44), Expect = 8e-19
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacctcggactgactcctacatgttagcatta 61
Query: 61 acag 64
||||
Sbjct: 62 acag 65
>33243_bta-mir-155:mirbase
Length = 63
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| |||| | |||||||||||| |||||||||
Sbjct: 1 tgttaatgctaatcgtgataggggtttttacctcggactgactcctacatgttagcatta 60
Query: 61 aca 63
|||
Sbjct: 61 aca 63
>34005_ssc-mir-155:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 2e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct: 9 tgttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatta 68
Query: 61 acag 64
||||
Sbjct: 69 acag 72
>31891_mmu-mir-155:mirbase
Length = 65
Score = 71.9 bits (36), Expect = 5e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||| |||||||||||||| ||||| | |||||||||| | |||||||||
Sbjct: 2 tgttaatgctaattgtgataggggttttggcctctgactgactcctacctgttagcatta 61
Query: 61 acag 64
||||
Sbjct: 62 acag 65
>26482_tgu-mir-155:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 2e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggggtttttgcctccaaatgactcctacatattagcatta 60
||||||||||||||||||||||||||||| ||| | ||||||||||| |||||||||
Sbjct: 9 tgttaatgctaatcgtgataggggtttttacctatgactgactcctacacgttagcatta 68
Query: 61 aca 63
|||
Sbjct: 69 aca 71
>25802_xtr-mir-155:mirbase
Length = 69
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 3 ttaatgctaatcgtgataggggttttt 29
|||||||||||||||||||||||||||
Sbjct: 3 ttaatgctaatcgtgataggggttttt 29
>31509_oan-mir-155:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 gttaatgctaatcgtgataggggtttt 28
|||||||||||||||||||||||||||
Sbjct: 23 gttaatgctaatcgtgataggggtttt 49
>34327_dre-mir-155:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 ttaatgctaatcgtgataggggttt 27
|||||||||||||||||||||||||
Sbjct: 11 ttaatgctaatcgtgataggggttt 35
>24839_cin-mir-155:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 tgttaatgctaatcgtgataggg 23
||||||||||||| |||||||||
Sbjct: 14 tgttaatgctaatagtgataggg 36
