miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00702;mir-182;ABGA01212254.1/9177-9093 9601:Pongo abelii
(Sumatran orangutan)
Length = 85
Score = 159 bits (80), Expect = 9e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 18 ccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagac 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagac 65
Query: 78 ttgccaactatggggcgagg 97
||||||||||||||||||||
Sbjct: 66 ttgccaactatggggcgagg 85
>RF00702;mir-182;AABR04001545.1/73147-73063 10116:Rattus
norvegicus (Norway rat)
Length = 85
Score = 115 bits (58), Expect = 1e-25
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 13 tccctccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttc 72
|||| |||||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||
Sbjct: 1 tcccaccgtttttggcaatggtagaactcacaccggtaaggtaacgggacccggtggttc 60
Query: 73 tagacttgccaactatgg 90
||||||||||||||||||
Sbjct: 61 tagacttgccaactatgg 78
>RF00702;mir-182;AAGU02431695.1/2312-2228 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 115 bits (58), Expect = 1e-25
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 18 ccgtttttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagac 77
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6 ccgtgtttggcaatggtagaactcacactggtgaggtaatgggatccggtggttctagac 65
Query: 78 ttgccaacta 87
||||||||||
Sbjct: 66 ttgccaacta 75
>RF00702;mir-182;AAIY01755693.1/720-804 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 85
Score = 105 bits (53), Expect = 1e-22
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 82
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggaaatgggatccggtggttctagacttgcc 70
Query: 83 aacta 87
|||||
Sbjct: 71 aacta 75
>RF00702;mir-182;BAAE01056755.1/3488-3572 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 105 bits (53), Expect = 1e-22
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 82
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggtagatggatccggtggttctagacttgcc 70
Query: 83 aacta 87
|||||
Sbjct: 71 aacta 75
>RF00702;mir-182;AAYZ01439986.1/1308-1225 9978:Ochotona princeps
(American pika)
Length = 84
Score = 103 bits (52), Expect = 5e-22
Identities = 65/68 (95%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 82
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgaggt-atgggatccggtggttctagacttgcc 69
Query: 83 aactatgg 90
||||||||
Sbjct: 70 aactatgg 77
>RF00702;mir-182;AAVX01309390.1/833-917 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 82
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcacactggtgagatagtgggatccggtggttctagacttgcc 70
Query: 83 aacta 87
|||||
Sbjct: 71 aacta 75
>RF00702;mir-182;AANH01001637.1/239950-240034 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 85
Score = 77.8 bits (39), Expect = 3e-14
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgaggtaacaggatccggtggttctagacttgcc 82
||||||||||||||||||||| |||||| | | |||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtgggctggaaggatccggtggttctagacttgcc 70
Query: 83 aac 85
|||
Sbjct: 71 aac 73
>RF00702;mir-182;BAAF04047675.1/12269-12354 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 63.9 bits (32), Expect = 4e-10
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 23 tttggcaatggtagaactcacactggtgagg-taacaggatccggtggttctagacttgc 81
||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||
Sbjct: 11 tttggcaatggtagaactcactctggtggtgctggaaggatccggtggttctagacttgc 70
Query: 82 caac 85
||||
Sbjct: 71 caac 74
