miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28495_hsa-mir-188:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
||||||||||||||||||||||||||
Sbjct: 61 atgcagggtttgcaggatggcgagcc 86
>28496_hsa-mir-188:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
||||||||||||||||||||||||||
Sbjct: 61 atgcagggtttgcaggatggcgagcc 86
>30109_ppa-mir-188:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
||||||||||||||||||||||||||
Sbjct: 61 atgcagggtttgcaggatggcgagcc 86
>30877_ppy-mir-188:mirbase
Length = 86
Score = 163 bits (82), Expect = 2e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
||||||||||||||||||||||||||
Sbjct: 61 atgcagggtttgcaggatggcgagcc 86
>33256_bta-mir-188:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
|||||||||||||||||||| |||||
Sbjct: 61 atgcagggtttgcaggatggtgagcc 86
>26743_cfa-mir-188:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttttgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
|||||||||||||||||||| |||||
Sbjct: 61 atgcagggtttgcaggatggtgagcc 86
>27779_mml-mir-188:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttatgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
|||||||||||||||||||| |||||
Sbjct: 61 atgcagggtttgcaggatggtgagcc 86
>28227_mne-mir-188:mirbase
Length = 86
Score = 147 bits (74), Expect = 1e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 1 tgctccctctctcacatcccttgcatggtggagggtgagctttatgaaaacccctcccac 60
Query: 61 atgcagggtttgcaggatggcgagcc 86
|||||||||||||||||||| |||||
Sbjct: 61 atgcagggtttgcaggatggtgagcc 86
>27068_eca-mir-188:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 10 tctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccacatgcagggt 69
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccacatgcagggt 60
Query: 70 ttgcagga 77
||||||||
Sbjct: 61 ttgcagga 68
>27069_eca-mir-188:mirbase
Length = 68
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 10 tctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccacatgcagggt 69
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 tctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccacatgcagggt 60
Query: 70 ttgcagga 77
||||||||
Sbjct: 61 ttgcagga 68
>31904_mmu-mir-188:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 10 tctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccacatgcagggt 69
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 tctcacatcccttgcatggtggagggtgagctctctgaaaacccctcccacatgcagggt 60
Query: 70 ttgcagga 77
||||||||
Sbjct: 61 ttgcagga 68
>31905_mmu-mir-188:mirbase
Length = 68
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 10 tctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccacatgcagggt 69
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1 tctcacatcccttgcatggtggagggtgagctctctgaaaacccctcccacatgcagggt 60
Query: 70 ttgcagga 77
||||||||
Sbjct: 61 ttgcagga 68
>32774_rno-mir-188:mirbase
Length = 80
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 ccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccacatgc 64
||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||
Sbjct: 1 ccctctctcacatcccttgcatggtggagggcgagctctctgaaaactcctcccacatgc 60
Query: 65 agggtttgcaggatgg 80
||||||||||||||||
Sbjct: 61 agggtttgcaggatgg 76
