miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01897;mir-188;ABRO01329850.1/1950-2056 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 107
Score = 153 bits (77), Expect = 4e-37
Identities = 83/85 (97%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12 tgctccctctctcacatcccttgcatggtggagggtgagctttctgaaaacccctcccac 71
Query: 61 atgcagggtttgcaggatggcgagc 85
|||||||||||||||||||| ||||
Sbjct: 72 atgcagggtttgcaggatggtgagc 96
>RF01897;mir-188;ABRQ01388379.1/2439-2545 9813:Procavia capensis
(cape rock hyrax)
Length = 107
Score = 139 bits (70), Expect = 6e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 12 tgctccctttctcacatcccttgcatggtggagggtgaactttatgaaaacccctcccac 71
Query: 61 atgcagggtttgcaggatggcgagcc 86
||||| |||||||||||||| |||||
Sbjct: 72 atgcaaggtttgcaggatggtgagcc 97
>RF01897;mir-188;AABR04026186.1/13355-13249 10116:Rattus
norvegicus (Norway rat)
Length = 107
Score = 129 bits (65), Expect = 6e-30
Identities = 80/85 (94%)
Strand = Plus / Plus
Query: 1 tgctccctctctcacatcccttgcatggtggagggtgaactttctgaaaacccctcccac 60
||||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct: 12 tgctccctctctcacatcccttgcatggtggagggcgagctctctgaaaactcctcccac 71
Query: 61 atgcagggtttgcaggatggcgagc 85
|||||||||||||||||||| ||||
Sbjct: 72 atgcagggtttgcaggatggtgagc 96
