miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28500_hsa-mir-192:mirbase
Length = 110
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gccgagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctccc 60
Query: 61 ctctggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
>30881_ppy-mir-192:mirbase
Length = 110
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 gccgagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gccgagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctccc 60
Query: 61 ctctggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
>27783_mml-mir-192:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 4 gagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gagaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctc 63
Query: 64 tggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 tggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
>33260_bta-mir-192:mirbase
Length = 106
Score = 192 bits (97), Expect = 4e-50
Identities = 103/105 (98%)
Strand = Plus / Plus
Query: 5 agaccgagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctct 64
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1 agaccgagtgcacagggctctgacctatgaattgacagccagtgctcttgtgtcccctct 60
Query: 65 ggctgccaattccataggtcacaggtatgttcgcctcaatgccag 109
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggctgccaattccataggtcacaggtatgttcgcctcaatgccag 105
>32778_rno-mir-192:mirbase
Length = 110
Score = 159 bits (80), Expect = 5e-40
Identities = 95/100 (95%)
Strand = Plus / Plus
Query: 10 gagtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctctggctg 69
|||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct: 10 gagtgcacagggctctgacctatgaattgacagccagtactctgatctcgcctctggctg 69
Query: 70 ccaattccataggtcacaggtatgttcgcctcaatgccag 109
||| ||||||||||||||||||||||||||||||||||||
Sbjct: 70 ccagttccataggtcacaggtatgttcgcctcaatgccag 109
>34020_ssc-mir-192:mirbase
Length = 80
Score = 151 bits (76), Expect = 1e-37
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 14 gcacagggctctgacctatgaattgacagccagtgctctcgtctcccctctggctgccaa 73
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcacagggctctgacctatgaattgacagccagtgctctcatctcccctctggctgccaa 60
Query: 74 ttccataggtcacaggtatg 93
||||||||||||||||||||
Sbjct: 61 ttccataggtcacaggtatg 80
>31909_mmu-mir-192:mirbase
Length = 89
Score = 137 bits (69), Expect = 2e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 12 gtgcacagggctctgacctatgaattgacagccagtgctctcgtctcccctctggctgcc 71
|||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct: 2 gtgcacagggctctgacctatgaattgacagccagtactcttttctctcctctggctgcc 61
Query: 72 aattccataggtcacaggtatgttc 96
|||||||||||||||||||||||||
Sbjct: 62 aattccataggtcacaggtatgttc 86
>31521_oan-mir-192:mirbase
Length = 91
Score = 133 bits (67), Expect = 3e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 14 gcacagggctctgacctatgaattgacagccagtgctctcgtctcccctctggctgccaa 73
|||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 6 gcacagggctctgacctatgaattgacagccagttctctc-tgacccctctggctgccaa 64
Query: 74 ttccataggtcacaggtatgttcgcct 100
|||||||||||||||||||||||||||
Sbjct: 65 ttccataggtcacaggtatgttcgcct 91
>26747_cfa-mir-192:mirbase
Length = 65
Score = 113 bits (57), Expect = 3e-26
Identities = 63/65 (96%)
Strand = Plus / Plus
Query: 24 ctgacctatgaattgacagccagtgctctcgtctcccctctggctgccaattccataggt 83
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 ctgacctatgaattgacagccagtgctctcatctctcctctggctgccaattccataggt 60
Query: 84 cacag 88
|||||
Sbjct: 61 cacag 65
>27073_eca-mir-192:mirbase
Length = 61
Score = 99.6 bits (50), Expect = 4e-22
Identities = 60/62 (96%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 24 ctgacctatgaattgacagccagtgctctcgtctcccctctggctgccaattccataggt 83
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1 ctgacctatgaattgacagccagtgctcttgtct-ccctctggctgccaattccataggt 59
Query: 84 ca 85
||
Sbjct: 60 ca 61
>25812_xtr-mir-192:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagtg 48
||||||||||||||||||||||||
Sbjct: 16 tgacctatgaattgacagccagtg 39
>34340_dre-mir-192:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagtg 48
||||||||||||||||||||||||
Sbjct: 17 tgacctatgaattgacagccagtg 40
>34619_fru-mir-192:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 16 tgacctatgaattgacagccagt 38
>34766_tni-mir-192:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagccagt 47
|||||||||||||||||||||||
Sbjct: 11 tgacctatgaattgacagccagt 33
>25512_pma-mir-192:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 tgacctatgaattgacagcc 44
||||||||||||||||||||
Sbjct: 16 tgacctatgaattgacagcc 35
