miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28501_hsa-mir-193a:mirbase
Length = 88
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagttctcggccccc 87
|||||||||||||||||||||||||||
Sbjct: 61 cctacaaagtcccagttctcggccccc 87
>28502_hsa-mir-193a:mirbase
Length = 88
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagttctcggccccc 87
|||||||||||||||||||||||||||
Sbjct: 61 cctacaaagtcccagttctcggccccc 87
>27784_mml-mir-193a:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
Query: 64 acaaagtcccagttctcggccccc 87
||||||||||||| ||||||||||
Sbjct: 61 acaaagtcccagtcctcggccccc 84
>27785_mml-mir-193a:mirbase
Length = 85
Score = 159 bits (80), Expect = 4e-40
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 60
Query: 64 acaaagtcccagttctcggccccc 87
||||||||||||| ||||||||||
Sbjct: 61 acaaagtcccagtcctcggccccc 84
>30882_ppy-mir-193a:mirbase
Length = 88
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagttctcggccccc 87
|||||||||||||||| ||||||||||
Sbjct: 61 cctacaaagtcccagtcctcggccccc 87
>30883_ppy-mir-193a:mirbase
Length = 88
Score = 157 bits (79), Expect = 2e-39
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactgg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 cgaggatgggagctgagggctgggtctttgcgggcgagatgaaggtgtcggatcaactgg 60
Query: 61 cctacaaagtcccagttctcggccccc 87
|||||||||||||||| ||||||||||
Sbjct: 61 cctacaaagtcccagtcctcggccccc 87
>34021_ssc-mir-193a:mirbase
Length = 80
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 68 agtcccagttctcggccc 85
||||||||| ||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>34022_ssc-mir-193a:mirbase
Length = 80
Score = 131 bits (66), Expect = 9e-32
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 3 gggagctgagggctgggtctttgcgggcgagatgagggtgttggttcaactggcctacaa 62
Query: 68 agtcccagttctcggccc 85
||||||||| ||||||||
Sbjct: 63 agtcccagtcctcggccc 80
>33261_bta-mir-193a:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 7 tgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctaca 66
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 67 aagtcccagttctcggccccc 87
|||||||||| ||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>33262_bta-mir-193a:mirbase
Length = 81
Score = 129 bits (65), Expect = 4e-31
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 7 tgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctaca 66
||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 1 tgggagctgagagctgggtctttgcgggcgagatgaaggtgtcggttcaactggcctaca 60
Query: 67 aagtcccagttctcggccccc 87
|||||||||| ||||||||||
Sbjct: 61 aagtcccagtcctcggccccc 81
>27074_eca-mir-193a:mirbase
Length = 81
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 68 agtcccagttctcggccccc 87
||||||||| |||||||||
Sbjct: 61 agtcccagtcttcggccccc 80
>27075_eca-mir-193a:mirbase
Length = 81
Score = 127 bits (64), Expect = 1e-30
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1 gggagctgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 60
Query: 68 agtcccagttctcggccccc 87
||||||||| |||||||||
Sbjct: 61 agtcccagtcttcggccccc 80
>32779_rno-mir-193:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
|||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 7 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 66
Query: 68 agtcccagttctcggc 83
||||||||| ||||||
Sbjct: 67 agtcccagtcctcggc 82
>33036_rno-mir-3549:mirbase
Length = 112
Score = 111 bits (56), Expect = 8e-26
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
|||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct: 95 gggagctgagagctgggtctttgcgggcaagatgagggtgtcagttcaactggcctacaa 36
Query: 68 agtcccagttctcggc 83
||||||||| ||||||
Sbjct: 35 agtcccagtcctcggc 20
>26748_cfa-mir-193a:mirbase
Length = 56
Score = 103 bits (52), Expect = 2e-23
Identities = 55/56 (98%)
Strand = Plus / Plus
Query: 21 tgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgggtctttgcgggcgagatgagggtgtcggttcaactggcctacaaagtcccagt 56
>27414_mdo-mir-193:mirbase
Length = 66
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 21 tgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagttctc 80
|||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 7 tgggtctttgtgggcgagatgagggtgtcagttcaactggcctacaaagtcccagttctc 66
>25982_gga-mir-193a:mirbase
Length = 77
Score = 83.8 bits (42), Expect = 2e-17
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 11 agctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctacaa 67
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct: 1 agctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctacaa 60
Query: 68 agtcccagttctcggc 83
||||||||||||||||
Sbjct: 61 agtcccagttctcggc 76
>31910_mmu-mir-193:mirbase
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 19 gctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaaagtcccagt 76
||||||||||||||||| ||||||| ||||| | ||||||||||||||||||||||||
Sbjct: 5 gctgggtctttgcgggcaagatgagagtgtcagttcaactggcctacaaagtcccagt 62
>26491_tgu-mir-193b:mirbase
Length = 69
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/68 (89%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 19 gctgggtctttgcgggcgagatgag-ggtgtcgga--tcaactggcctacaaagtcccag 75
||||||||||||||||||||||||| ||| | | |||||||||||||||||||||||
Sbjct: 1 gctgggtctttgcgggcgagatgagaggttcctgtcttcaactggcctacaaagtcccag 60
Query: 76 ttctcggc 83
||||||||
Sbjct: 61 ttctcggc 68
>34342_dre-mir-193a-2:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttctcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34343_dre-mir-193a-3:mirbase
Length = 98
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttctcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 53 tcaactggcctacaaagtcccagttttcggccc 85
>34341_dre-mir-193a-1:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtt 77
|||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagtt 83
>34620_fru-mir-193:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||
Sbjct: 48 tcaactggcctacaaagtcccagt 71
>34767_tni-mir-193:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||
Sbjct: 43 tcaactggcctacaaagtcccagt 66
>33263_bta-mir-193a-2:mirbase
Length = 53
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aactggcctacaaagtcccag 75
|||||||||||||||||||||
Sbjct: 51 aactggcctacaaagtcccag 31
