miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01895;mir-193;AANU01121342.1/16348-16249 9544:Macaca mulatta
(rhesus monkey)
Length = 100
Score = 159 bits (80), Expect = 7e-39
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 4 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcct 66
Query: 64 acaaagtcccagttctcggccccc 87
||||||||||||| ||||||||||
Sbjct: 67 acaaagtcccagtcctcggccccc 90
>RF01895;mir-193;ABRQ01070765.1/8182-8083 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 2 gaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggc 61
||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 gaggacgggagctgagagctgggtctttgcgggcgagatgagggtgtcgtttcaactggc 64
Query: 62 ctacaaagtcccagttctcggccccc 87
||||||||||||||| ||||||||||
Sbjct: 65 ctacaaagtcccagtcctcggccccc 90
>RF01895;mir-193;ABRO01253416.1/598-499 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 11 gggagttgagggctgggtctttgcgggcgagatgagggtgtcagttcaactggcctacaa 70
Query: 68 agtcccagttctcggccccc 87
||||||||| ||||||||||
Sbjct: 71 agtcccagtcctcggccccc 90
>RF01895;mir-193;ABRP01134350.1/232-133 132908:Pteropus vampyrus
(large flying fox)
Length = 100
Score = 119 bits (60), Expect = 6e-27
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11 gggagctgaggactgggtctttgcgggcgagatgagggtgtcgattcaactggcctacaa 70
Query: 68 agtcccagttctcggc 83
||||||||| ||||||
Sbjct: 71 agtcccagtcctcggc 86
>RF01895;mir-193;ABQO011024331.1/609-510 9315:Macropus eugenii
(tammar wallaby)
Length = 100
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 2 gaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggc 61
||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 5 gaggacgggagttgaggactgggtctttgcgggcgagatgagggtgtcaattcaactggc 64
Query: 62 ctacaaagtcccagttctcgg 82
|||||||||||||||||||||
Sbjct: 65 ctacaaagtcccagttctcgg 85
>RF01895;mir-193;AAFR03044744.1/21764-21665 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 100
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 2 gaggatgggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggc 61
||||||||||| ||||| |||||||||| |||||||||||||||||| | |||||||||
Sbjct: 5 gaggatgggagttgaggattgggtctttgtgggcgagatgagggtgtcagttcaactggc 64
Query: 62 ctacaaagtcccagttctcgg 82
|||||||||||||||||||||
Sbjct: 65 ctacaaagtcccagttctcgg 85
>RF01895;mir-193;CAAA01067610.1/28843-28744 10090:Mus musculus
(house mouse)
Length = 100
Score = 103 bits (52), Expect = 4e-22
Identities = 73/80 (91%)
Strand = Plus / Plus
Query: 8 gggagctgagggctgggtctttgcgggcgagatgagggtgtcggatcaactggcctacaa 67
|||||||||| ||||||||||||||||| ||||||| ||||| | |||||||||||||||
Sbjct: 11 gggagctgagagctgggtctttgcgggcaagatgagagtgtcagttcaactggcctacaa 70
Query: 68 agtcccagttctcggccccc 87
||||||||| ||||| ||||
Sbjct: 71 agtcccagtcctcggtcccc 90
>RF01895;mir-193;AADN02030009.1/500-602 9031:Gallus gallus
(chicken)
Length = 103
Score = 85.7 bits (43), Expect = 8e-17
Identities = 69/77 (89%), Gaps = 3/77 (3%)
Strand = Plus / Plus
Query: 10 gagctgagggctgggtctttgcgggcgagatgagggtgtcg---gatcaactggcctaca 66
|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct: 13 gagctgagggctgggtctttgcgggcgagatgagaggttcgtgtcttcaactggcctaca 72
Query: 67 aagtcccagttctcggc 83
|||||||||||||||||
Sbjct: 73 aagtcccagttctcggc 89
>RF01895;mir-193;AAWZ01016511.1/69007-69110 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttctcggcccc 86
|||||||||||||||||||||||| |||||||||
Sbjct: 60 tcaactggcctacaaagtcccagtcctcggcccc 93
>RF01895;mir-193;BX663498.9/9090-8989 7955:Danio rerio (zebrafish)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagttctcggccc 85
||||||||||||||||||||||||| |||||||
Sbjct: 59 tcaactggcctacaaagtcccagttttcggccc 91
>RF01895;mir-193;CAAK05050431.1/18938-19042 7955:Danio rerio
(zebrafish)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtt 77
|||||||||||||||||||||||||
Sbjct: 62 tcaactggcctacaaagtcccagtt 86
>RF01895;mir-193;AANH01003096.1/75841-75740 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtt 77
|||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagtt 83
>RF01895;mir-193;BAAF04031349.1/1289-1188 8090:Oryzias latipes
(Japanese medaka)
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagtt 77
|||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagtt 83
>RF01895;mir-193;CAAB01000713.1/34967-35068 31033:Takifugu
rubripes
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 tcaactggcctacaaagtcccagt 76
||||||||||||||||||||||||
Sbjct: 59 tcaactggcctacaaagtcccagt 82
