miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 61
Query: 61 ccgattcac 69
|||||||||
Sbjct: 62 ccgattcac 70
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 61
Query: 61 ccgattcac 69
|||||||||
Sbjct: 62 ccgattcac 70
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 61
Query: 61 ccgattcac 69
|||||||||
Sbjct: 62 ccgattcac 70
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 61
Query: 61 ccgattcac 69
|||||||||
Sbjct: 62 ccgattcac 70
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 121 bits (61), Expect = 6e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10 tgaattaggtagtttcatgttgttgggcctggatttctgaacacaacaacattaaaccac 69
Query: 61 ccgattcac 69
|||| ||||
Sbjct: 70 ccgactcac 78
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 19 tgaattaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaaccac 78
Query: 61 ccgattcac 69
|||| ||||
Sbjct: 79 ccgactcac 87
>27080_eca-mir-196a:mirbase
Length = 70
Score = 105 bits (53), Expect = 4e-24
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccacccga 64
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 6 ttaggtagtttcatgttgttgggcctggatttctgaacacaacgacattaaaccacccga 65
Query: 65 ttcac 69
||||
Sbjct: 66 ctcac 70
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
|||| ||||||||||||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct: 19 tgaagtaggtagtttcatgttgttgggcctggctttctgaacacaacgacatcaaaccac 78
Query: 61 ccgattca 68
| ||||||
Sbjct: 79 ctgattca 86
>32785_rno-mir-196c:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggcctgggtttctgaacacaacaacattaaaccac 60
|||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 6 tgaagtaggtagtttcgtgttgttgggcctggctttctgaacacaacaacaccaaaccac 65
Query: 61 ccgattcac 69
| |||||||
Sbjct: 66 ctgattcac 74
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgaattaggtagtttcatgttgttgggc 28
||||||||||||||||||||||||||||
Sbjct: 19 tgaattaggtagtttcatgttgttgggc 46
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 23 ttaggtagtttcatgttgttggg 45
>27515_age-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 28 ttaggtagtttcatgttgttggg 50
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 24 ttaggtagtttcatgttgttggg 46
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 21 ttaggtagtttcatgttgttggg 43
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 20 ttaggtagtttcatgttgttggg 42
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 15 ttaggtagtttcatgttgttggg 37
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||||||||||||||
Sbjct: 10 ttaggtagtttcatgttgttggg 32
>25515_pma-mir-196a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 taggtagtttcatgttgttggg 27
||||||||||||||||||||||
Sbjct: 11 taggtagtttcatgttgttggg 32
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 taggtagtttcatgttgttggg 27
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttgggc 28
||||||||||| ||||||||||||
Sbjct: 15 ttaggtagttttatgttgttgggc 38
>34349_dre-mir-196b:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttgggc 28
||||||||||||| ||||||||||
Sbjct: 10 ttaggtagtttcaagttgttgggc 33
>34351_dre-mir-196d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttgggc 28
||||||||||| ||||||||||||
Sbjct: 7 ttaggtagttttatgttgttgggc 30
>27081_eca-mir-196b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 14 ttaggtagtttcctgttgttggg 36
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcctgttgttggg 37
>27792_mml-mir-196b:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 14 ttaggtagtttcctgttgttggg 36
>28509_hsa-mir-196b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 14 ttaggtagtttcctgttgttggg 36
>30273_ptr-mir-196b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 14 ttaggtagtttcctgttgttggg 36
>30889_ppy-mir-196b:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 14 ttaggtagtttcctgttgttggg 36
>31526_oan-mir-196b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcctgttgttggg 37
>31917_mmu-mir-196b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcctgttgttggg 37
>32784_rno-mir-196b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcctgttgttggg 37
>33270_bta-mir-196b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 15 ttaggtagtttcctgttgttggg 37
>34027_ssc-mir-196b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 13 ttaggtagtttcctgttgttggg 35
>34028_ssc-mir-196b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
|||||||||||| ||||||||||
Sbjct: 13 ttaggtagtttcctgttgttggg 35
>34350_dre-mir-196c:mirbase
Length = 110
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 ttaggtagtttcatgttgttggg 27
||||||||||| |||||||||||
Sbjct: 22 ttaggtagtttgatgttgttggg 44
>34624_fru-mir-196b:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 taggtagtttcatgttgttgggc 28
|||||||||||| ||||||||||
Sbjct: 8 taggtagtttcaagttgttgggc 30
>34771_tni-mir-196b:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 7e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6 taggtagtttcatgttgttgggc 28
|||||||||||| ||||||||||
Sbjct: 8 taggtagtttcaagttgttgggc 30
