miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 131 bits (66), Expect = 1e-30
Identities = 69/70 (98%)
Strand = Plus / Plus
Query: 1 gccaacccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcac 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 16 gccaacccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcac 75
Query: 61 attggttagg 70
||||||||||
Sbjct: 76 attggttagg 85
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 107 bits (54), Expect = 2e-23
Identities = 67/70 (95%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccaacccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcac 60
||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 16 gccaacccagtgttcagactacctgttcagg-ggttctgaatgtgtacagtagtctgcac 74
Query: 61 attggttagg 70
||||||||||
Sbjct: 75 attggttagg 84
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 105 bits (53), Expect = 7e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtctgcacattgg 80
Query: 66 ttagg 70
|||||
Sbjct: 81 ttagg 85
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 99.6 bits (50), Expect = 4e-21
Identities = 66/70 (94%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccaacccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcac 60
|||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 16 gccatcccagtgttcagactag-tgttcaggaggctctgaatgtgtacagtagtctgcac 74
Query: 61 attggttagg 70
||||||||||
Sbjct: 75 attggttagg 84
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggcgcctctgcatgtgtacagtagtctgcacattgg 80
Query: 66 ttagg 70
|||||
Sbjct: 81 ttagg 85
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattgg 80
Query: 66 ttag 69
||||
Sbjct: 81 ttag 84
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccaacccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcac 60
|||| |||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 16 gccatcccagtgttcagactacctgttcaggcggctgt-gatgtgtacagtagtctgcac 74
Query: 61 attggttagg 70
| ||||||||
Sbjct: 75 actggttagg 84
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 77.8 bits (39), Expect = 2e-14
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 5 acccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattg 64
|||||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 19 acccagtgtttagactacctgttcagga--ctcccaaattgtacagtagtctgcacattg 76
Query: 65 gttagg 70
||||||
Sbjct: 77 gttagg 82
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 75.8 bits (38), Expect = 6e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gccaacccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcac 60
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 16 gccatcccagtgttcagactacctgttcaggaggct-gggacatgtacagtagtctgcac 74
Query: 61 attggttagg 70
||||||||||
Sbjct: 75 attggttagg 84
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 73.8 bits (37), Expect = 2e-13
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
||||||||||||||||||||| |||||| | || |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgtccaggagattgcaaaggtgtacagtagtctgcacattgg 80
Query: 66 ttagg 70
|||||
Sbjct: 81 ttagg 85
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 69.9 bits (35), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 5 acccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattg 64
|||||||||| |||||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 19 acccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattg 76
Query: 65 gttagg 70
||||||
Sbjct: 77 gttagg 82
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 67.9 bits (34), Expect = 2e-11
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggct-ctcaatgtgtacagtagtctgcacattg 64
|||||||||||||||||||||||||| |||| || | | ||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg-ggctgctgcacgcgtacagtagtctgcacattg 79
Query: 65 gttagg 70
||||||
Sbjct: 80 gttagg 85
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaat-gtgtacagtagtctgcacattg 64
||||||||||||||||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga---tcatactggtgtacagtagtctgcacattg 77
Query: 65 gttag 69
|||||
Sbjct: 78 gttag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 61.9 bits (31), Expect = 9e-10
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaat-gtgtacagtagtctgcacattg 64
||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga---ttttactggtgtacagtagtctgcacattg 77
Query: 65 gttag 69
|||||
Sbjct: 78 gttag 82
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 60.0 bits (30), Expect = 4e-09
Identities = 57/65 (87%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga--ctacgagattgtacagtagtctgcacattgg 77
Query: 66 ttagg 70
|||||
Sbjct: 78 ttagg 82
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 56.0 bits (28), Expect = 6e-08
Identities = 58/68 (85%), Gaps = 10/68 (14%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatg----tgtacagtagtctgcaca 61
||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga------caatgctgttgtacagtagtctgcaca 74
Query: 62 ttggttag 69
||||||||
Sbjct: 75 ttggttag 82
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 56.0 bits (28), Expect = 6e-08
Identities = 57/64 (89%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
||||||||||||||||||||||||| | || || |||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagaat-ct-tcctggtgtacagtagtctgcacattgg 78
Query: 66 ttag 69
||||
Sbjct: 79 ttag 82
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga 46
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||||||||||||||||||
Sbjct: 56 tgtacagtagtctgcacattggttagg 82
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagg 83
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagg 31
||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagg 46
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 gtgtacagtagtctgcacattggttag 69
|||||||||||||||||||||||||||
Sbjct: 56 gtgtacagtagtctgcacattggttag 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 acccagtgttcagactacctgttca 29
|||||||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttca 44
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga 47
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagg 83
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttcagga 46
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||||||||||||||||||
Sbjct: 56 tgtacagtagtctgcacattggttagg 82
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 gtgtacagtagtctgcacattggttag 69
|||||||||||||||||||||||||||
Sbjct: 56 gtgtacagtagtctgcacattggttag 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 acccagtgttcagactacctgttca 29
|||||||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttca 44
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga 47
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttagg 83
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 43 gtgtacagtagtctgcacattggttag 69
|||||||||||||||||||||||||||
Sbjct: 56 gtgtacagtagtctgcacattggttag 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 acccagtgttcagactacctgttca 29
|||||||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttca 44
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagga 47
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 52.0 bits (26), Expect = 9e-07
Identities = 56/65 (86%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcaggaggctctcaatgtgtacagtagtctgcacattgg 65
|||||||||||||||||||||||| ||| || | || |||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcatcagg--ctgcagctgaacagtagtctgcacattgg 78
Query: 66 ttagg 70
|||||
Sbjct: 79 ttagg 83
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttca 29
||||||||||||||||||||||||
Sbjct: 20 cccagtgttcagactacctgttca 43
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttca 29
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttca 29
||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttca 44
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 acagtagtctgcacattggttagg 70
||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttagg 83
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 acagtagtctgcacattggttagg 70
||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttagg 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttc 28
|||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttc 43
>RF00144;mir-199;ABRT010369364.1/546-644 9478:Tarsius syrichta
(Philippine tarsier)
Length = 99
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 cccagtgttcagactacctgttcagga 32
|||||||||||||||||||||| ||||
Sbjct: 20 cccagtgttcagactacctgttaagga 46
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 tgtacagtagtctgcacattggttagg 70
|||||||||||| ||||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttagg 80
