miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00144;mir-199;ABRQ01043924.1/1531-1628 9813:Procavia capensis
(cape rock hyrax)
Length = 98
Score = 194 bits (98), Expect = 2e-49
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 7 gacacctccactccgtctacccagtgtttagactatctgttcaggactcccaaattgtac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacacctccactccgtctacccagtgtttagactatctgttcaggactcccaaattgtac 60
Query: 67 agtagtctgcacattggttaggctgggctgggttagac 104
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agtagtctgcacattggttaggctgggctgggttagac 98
>RF00144;mir-199;AAHX01020762.1/285-187 10116:Rattus norvegicus
(Norway rat)
Length = 99
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 19 ccgtctacccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcac 78
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13 ccgtctacccagtgtttagactacctgttcaggactcccaaattgtacagtagtctgcac 72
Query: 79 attggttaggctgggctgggttagacc 105
|||||||||||||||||||||||||||
Sbjct: 73 attggttaggctgggctgggttagacc 99
>RF00144;mir-199;AADN02026635.1/12137-12039 9031:Gallus gallus
(chicken)
Length = 99
Score = 117 bits (59), Expect = 3e-26
Identities = 80/87 (91%)
Strand = Plus / Plus
Query: 12 ctccactccgtctacccagtgtttagactatctgttcaggactcccaaattgtacagtag 71
||||||||||||| ||||||||| |||||| |||||||||||| | | ||||||||||||
Sbjct: 6 ctccactccgtctgcccagtgttcagactacctgttcaggactacgagattgtacagtag 65
Query: 72 tctgcacattggttaggctgggctggg 98
|||||||||||||||||||| ||||||
Sbjct: 66 tctgcacattggttaggctgtgctggg 92
>RF00144;mir-199;AANU01122656.1/5080-5181 9544:Macaca mulatta
(rhesus monkey)
Length = 102
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/73 (90%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 25 acccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattg 82
|||||||||| |||||| |||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttcaggaggctctcaacgtgtacagtagtctgcacattg 79
Query: 83 gttaggctgggct 95
|||||||||||||
Sbjct: 80 gttaggctgggct 92
>RF00144;mir-199;AAWR02017790.1/21207-21308 9796:Equus caballus
(horse)
Length = 102
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/71 (88%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 26 cccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattgg 83
||||||||| |||||| ||||||||| |||| || ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggggctccgaatgtgtacagtagtctgcacattgg 80
Query: 84 ttaggctgggc 94
|||||||||||
Sbjct: 81 ttaggctgggc 91
>RF00144;mir-199;AAFR03049221.1/24866-24967 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggct 95
||||||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;AAQQ01144563.1/4013-4113 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 101
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggct 95
||||||||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggctgggct 91
>RF00144;mir-199;AAHY01076446.1/77391-77291 10090:Mus musculus
(house mouse)
Length = 101
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggct 95
||||||||||||||||||||||||||||||||||
Sbjct: 58 tgtacagtagtctgcacattggttaggctgggct 91
>RF00144;mir-199;AAKN02056464.1/56518-56417 10141:Cavia porcellus
(domestic guinea pig)
Length = 102
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggct 95
||||||||||||||||||||||||||||||||||
Sbjct: 59 tgtacagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;CAAK05055714.1/3303-3204 7955:Danio rerio
(zebrafish)
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 26 cccagtgtttagactatctgttcaggactcccaaattgtacagtagtctgcacattggtt 85
||||||||| |||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcagggcgtagagattgtacagtagtctgcacattggtt 80
Query: 86 aggctg 91
||||||
Sbjct: 81 aggctg 86
>RF00144;mir-199;AANH01004317.1/876-975 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttaggctgggctggg 98
||||||||||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggctgggctggg 93
>RF00144;mir-199;ABDC01156515.1/926-825 30608:Microcebus murinus
(gray mouse lemur)
Length = 102
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 63 gtacagtagtctgcacattggttaggctgggct 95
|||||||||||||||||||||||||||||||||
Sbjct: 60 gtacagtagtctgcacattggttaggctgggct 92
>RF00144;mir-199;AAWZ01010560.1/117412-117513 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 65.9 bits (33), Expect = 1e-10
Identities = 63/72 (87%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 26 cccagtgtttagactatctgttcagga--ctcccaaattgtacagtagtctgcacattgg 83
||||||||| |||||| |||||||||| || | || ||||||||||||||||||||||
Sbjct: 21 cccagtgttcagactacctgttcaggaagctacaaaggtgtacagtagtctgcacattgg 80
Query: 84 ttaggctgggct 95
|||| |||||||
Sbjct: 81 ttagactgggct 92
>RF00144;mir-199;CU138550.14/80968-81064 7955:Danio rerio
(zebrafish)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttaggctgg 92
||||||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;ABPJ01035359.1/311-410 35575:Mchenga conophoros
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttaggctgg 92
||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttaggctgg 87
>RF00144;mir-199;AANH01004681.1/136443-136347 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttaggctgg 92
||||||||||||||||||||||||||||||||
Sbjct: 55 ttgtacagtagtctgcacattggttaggctgg 86
>RF00144;mir-199;BAAE01013242.1/84-183 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttaggctgg 92
||||||||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttaggctgg 87
>RF00144;mir-199;AAHX01053598.1/14659-14563 10116:Rattus
norvegicus (Norway rat)
Length = 97
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggct 95
|||||||||||| |||||||||||||||||||||
Sbjct: 54 tgtacagtagtcagcacattggttaggctgggct 87
>RF00144;mir-199;ABRQ01040059.1/381-480 9813:Procavia capensis
(cape rock hyrax)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 25 acccagtgtttagactatctgttcaggactcccaaat-tgtacagtagtctgcacattgg 83
|||||||||| |||||| ||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 20 acccagtgttcagactacctgttcaggggttctgaatgtgtacagtagtctgcacattgg 79
Query: 84 ttaggc 89
||||||
Sbjct: 80 ttaggc 85
>RF00144;mir-199;ABQF01040854.1/79152-79251 59729:Taeniopygia
guttata
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttaggctgggc 94
||||||||||||||||||||||||||| ||||||
Sbjct: 56 ttgtacagtagtctgcacattggttagactgggc 89
>RF00144;mir-199;BX088529.6/78678-78580 7955:Danio rerio
(zebrafish)
Length = 99
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttaggctgggctggg 98
||||||||| ||||||||||||||||||||||||
Sbjct: 59 acagtagtccgcacattggttaggctgggctggg 92
>RF00144;mir-199;ABPJ01052317.1/532-631 35575:Mchenga conophoros
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttaggctgggctggg 98
|||||||||||||||||||||||||| |||||||
Sbjct: 60 acagtagtctgcacattggttaggctaggctggg 93
>RF00144;mir-199;CAAB01000803.1/18144-18243 31033:Takifugu
rubripes
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactgggc 89
>RF00144;mir-199;AANH01005434.1/24491-24590 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactgggc 89
>RF00144;mir-199;BAAF04061048.1/5562-5661 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctgggc 94
|||||||||||||||||||||||||| ||||||
Sbjct: 57 tgtacagtagtctgcacattggttagactgggc 89
>RF00144;mir-199;ABRO01249229.1/2824-2923 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttaggctggg 93
|||||||||||||||||| |||||||||||||
Sbjct: 58 tgtacagtagtctgcacactggttaggctggg 89
>RF00144;mir-199;AAVX01256932.1/291-390 7868:Callorhinchus milii
(ghost shark)
Length = 100
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 61 ttgtacagtagtctgcacattggttag 87
|||||||||||||||||||||||||||
Sbjct: 56 ttgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CT563248.9/85109-85010 7955:Danio rerio
(zebrafish)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttag 87
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CAAB01001079.1/26340-26439 31033:Takifugu
rubripes
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttag 87
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
>RF00144;mir-199;CAAB01000177.1/183726-183824 31033:Takifugu
rubripes
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttaggctgggctggg 98
|||||||||||||||||||||| |||||| ||||
Sbjct: 60 acagtagtctgcacattggttaagctgggttggg 93
>RF00144;mir-199;BAAE01184372.1/319-221 8090:Oryzias latipes
(Japanese medaka)
Length = 99
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 acagtagtctgcacattggttaggct 90
||||||||||||||||||||||||||
Sbjct: 60 acagtagtctgcacattggttaggct 85
>RF00144;mir-199;BAAF04076833.1/4729-4828 8090:Oryzias latipes
(Japanese medaka)
Length = 100
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 62 tgtacagtagtctgcacattggttag 87
||||||||||||||||||||||||||
Sbjct: 57 tgtacagtagtctgcacattggttag 82
