miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28521_hsa-mir-202:mirbase
Length = 110
Score = 212 bits (107), Expect = 4e-56
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 3 cctcagagccgcccgccgttcctttttcctatgcatatacttctttgaggatctggccta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctcagagccgcccgccgttcctttttcctatgcatatacttctttgaggatctggccta 62
Query: 63 aagaggtatagggcatgggaaaacggggcggtcgggtcctccccagc 109
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aagaggtatagggcatgggaaaacggggcggtcgggtcctccccagc 109
>33281_bta-mir-202:mirbase
Length = 99
Score = 119 bits (60), Expect = 4e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 11 gttcctttttcctatgcatatacttctttgagggtctggcctaaagaggtgtagggcatg 70
Query: 80 ggaaaacggggc 91
|||||| |||||
Sbjct: 71 ggaaaatggggc 82
>32792_rno-mir-202:mirbase
Length = 72
Score = 107 bits (54), Expect = 2e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 80 ggaaaa 85
||||||
Sbjct: 61 ggaaaa 66
>31927_mmu-mir-202:mirbase
Length = 72
Score = 103 bits (52), Expect = 3e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 80 ggaa 83
||||
Sbjct: 61 ggaa 64
>31928_mmu-mir-202:mirbase
Length = 72
Score = 103 bits (52), Expect = 3e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgtggatctggtctaaagaggtatagcgcatg 60
Query: 80 ggaa 83
||||
Sbjct: 61 ggaa 64
>26762_cfa-mir-202:mirbase
Length = 71
Score = 101 bits (51), Expect = 1e-22
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||||||
Sbjct: 1 gttcctttttcctatgcatatacttctttgagggtctggcctgaagaggtgtaaggcatg 60
Query: 80 ggaaaacgggg 90
|||||| ||||
Sbjct: 61 ggaaaaggggg 71
>25993_gga-mir-202:mirbase
Length = 89
Score = 81.8 bits (41), Expect = 1e-16
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||||| | || ||||||||| |||| |||||
Sbjct: 8 gttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatg 67
Query: 80 ggaaaacggggcg 92
|||||| ||||||
Sbjct: 68 ggaaaatggggcg 80
>34033_ssc-mir-202:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 1e-16
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 28 ttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaaaacg 87
||||||||||||||||||||||||| |||||||| ||||||| || ||||||||||| ||
Sbjct: 13 ttcctatgcatatacttctttgagggtctggcctgaagaggtgta-ggcatgggaaaccg 71
Query: 88 gggcg 92
|||||
Sbjct: 72 gggcg 76
>26500_tgu-mir-202-1:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 24 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaa 83
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 84 aacggggc 91
|| |||||
Sbjct: 61 aatggggc 68
>26501_tgu-mir-202-2:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 4e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 24 ctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatgggaa 83
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 ctttttcctatgcatatacttctttgagaattgcttctaaagaggtatagggcatgggaa 60
Query: 84 aacggggc 91
|| |||||
Sbjct: 61 aatggggc 68
>34358_dre-mir-202:mirbase
Length = 76
Score = 67.9 bits (34), Expect = 1e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||
Sbjct: 3 gttcctttttcctatgcatatacctctttgacatgctgctttaaagaggcatagggcatg 62
Query: 80 ggaaaacggggcgg 93
|||||| |||||||
Sbjct: 63 ggaaaatggggcgg 76
>25822_xtr-mir-202-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttga 50
||||||||||||||||||||||| |||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttga 37
>25823_xtr-mir-202-2:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttga 50
||||||||||||||||||||||| |||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttga 37
>34630_fru-mir-202:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 taaagaggtatagggcatgggaaaacgggg 90
|||||||| |||||||||||||||| ||||
Sbjct: 40 taaagaggcatagggcatgggaaaatgggg 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tcctttttcctatgcatatac 42
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
>34777_tni-mir-202:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 taaagaggtatagggcatgggaaaacgggg 90
|||||||| |||||||||||||||| ||||
Sbjct: 40 taaagaggcatagggcatgggaaaatgggg 69
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tcctttttcctatgcatatac 42
|||||||||||||||||||||
Sbjct: 1 tcctttttcctatgcatatac 21
