miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 165 bits (83), Expect = 1e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 14 cccgccgttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatag 73
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cccgccgttcctttttcctatgcatatacttctttgaagatctggcctaaagaggtatag 60
Query: 74 ggcatgggaaaacggggcggtcgggtc 100
|||||||||||||||||||||||||||
Sbjct: 61 ggcatgggaaaacggggcggtcgggtc 87
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 131 bits (66), Expect = 2e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 66
Query: 80 ggaaaa 85
||||||
Sbjct: 67 ggaaaa 72
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 123 bits (62), Expect = 5e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatatggcatg 66
Query: 80 ggaaaa 85
||||||
Sbjct: 67 ggaaaa 72
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 85.7 bits (43), Expect = 1e-16
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 23 cctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatggga 82
|||||||||||||||||||||||||||||| ||||| | |||||||||||| |||| |||
Sbjct: 10 cctttttcctatgcatatacttctttgagggtctggtccaaagaggtatagcgcatagga 69
Query: 83 aaacggggcgg 93
||||| ||||
Sbjct: 70 caacggcgcgg 80
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 81.8 bits (41), Expect = 2e-15
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||||| | || ||||||||| |||| |||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagcatg 66
Query: 80 ggaaaacggggcg 92
|||||| ||||||
Sbjct: 67 ggaaaatggggcg 79
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 71.9 bits (36), Expect = 2e-12
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 79
|||||||||||||||||||||||||||||||| || ||||||||| |||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 80 ggaaaacggggc 91
|||||| |||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttga 50
|||||||||||||||||||||||||||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttga 37
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 20 gttcctttttcctatgcatatacttctttga 50
||||||||||||||||||||||| |||||||
Sbjct: 7 gttcctttttcctatgcatatacctctttga 37
