miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28522_hsa-mir-203:mirbase
Length = 110
Score = 208 bits (105), Expect = 6e-55
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 1 tgttggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgttggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgca 61
Query: 61 attgtgaaatgtttaggaccactagactcggcgggcgcggcgacagcga 109
||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 62 attgtgaaatgtttaggaccactagacccggcgggcgcggcgacagcga 110
>30899_ppy-mir-203:mirbase
Length = 110
Score = 200 bits (101), Expect = 1e-52
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 1 tgttggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgttggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgca 61
Query: 61 attgtgaaatgtttaggaccactagactcggcgggcgcggcgacagcga 109
||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 62 attgtgaaatgtttaggaccactagacccggcgggcacggcgacagcga 110
>27800_mml-mir-203:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 4 tggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaatt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 tggggactcgcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaatt 64
Query: 64 gtgaaatgtttaggaccactagactcggcgggcgcggcgacagcga 109
|||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 65 gtgaaatgtttaggaccactagacccggcgggcacggcgacagcga 110
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 13 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 27
Query: 73 ttaggaccactagactcggcgggcgc 98
||||||||||||||| ||||||||||
Sbjct: 26 ttaggaccactagacccggcgggcgc 1
>29378_hsa-mir-3545:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Minus
Query: 13 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 27
Query: 73 ttaggaccactagactcggcgggcgc 98
||||||||||||||| ||||||||||
Sbjct: 26 ttaggaccactagacccggcgggcgc 1
>26763_cfa-mir-203:mirbase
Length = 94
Score = 155 bits (78), Expect = 8e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 13 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 64
Query: 73 ttaggaccactagactcggcgggcgcggcg 102
||||||||||||| | |||||||| |||||
Sbjct: 65 ttaggaccactagccccggcgggcccggcg 94
>32793_rno-mir-203:mirbase
Length = 97
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 68
Query: 81 actagactcggcg 93
||||||| |||||
Sbjct: 69 actagacccggcg 81
>33031_rno-mir-3545:mirbase
Length = 115
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 34
Query: 81 actagactcggcg 93
||||||| |||||
Sbjct: 33 actagacccggcg 21
>33032_rno-mir-3545:mirbase
Length = 115
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Minus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 34
Query: 81 actagactcggcg 93
||||||| |||||
Sbjct: 33 actagacccggcg 21
>31929_mmu-mir-203:mirbase
Length = 76
Score = 119 bits (60), Expect = 4e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5 ggtccagtggttcttgacagttcaacagttctgtagcacaattgtgaaatgtttaggacc 64
Query: 81 actagactcggc 92
||||||| ||||
Sbjct: 65 actagacccggc 76
>26502_tgu-mir-203:mirbase
Length = 132
Score = 93.7 bits (47), Expect = 3e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccact 120
>25824_xtr-mir-203:mirbase
Length = 74
Score = 91.7 bits (46), Expect = 1e-19
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 9 agtggttcttaacagttcaacagttctctatcgaaattgtgaaatgtttaggaccact 66
>25994_gga-mir-203:mirbase
Length = 98
Score = 85.7 bits (43), Expect = 6e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 17 cagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccact 75
>27421_mdo-mir-203:mirbase
Length = 81
Score = 85.7 bits (43), Expect = 6e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 10 ggtccagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggacc 69
Query: 81 act 83
|||
Sbjct: 70 act 72
>25521_pma-mir-203b:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 84
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccactt 75
Query: 85 gactcgg 91
|||||||
Sbjct: 76 gactcgg 82
>34359_dre-mir-203a:mirbase
Length = 96
Score = 77.8 bits (39), Expect = 1e-15
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 31 cagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccact 89
>25520_pma-mir-203a:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 9e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 24 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
>34631_fru-mir-203:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 4e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccact 65
>34778_tni-mir-203:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 4e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 65
>34360_dre-mir-203b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttct 52
||||||||| |||||||||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttct 40
