miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00696;mir-203;AAYZ01488695.1/188-267 9978:Ochotona princeps
(American pika)
Length = 80
Score = 127 bits (64), Expect = 3e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 13 gcgcgctgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgt 72
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgcgccgggtccagtggttcttagcagttcaacagttctgtagcgcaattgtgaaatgt 60
Query: 73 ttaggaccactagactcggc 92
||||||||||| ||| ||||
Sbjct: 61 ttaggaccactcgacccggc 80
>RF00696;mir-203;AAFR03013559.1/2925-3004 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 21 ggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggacc 80
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 9 ggtccagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggacc 68
Query: 81 act 83
|||
Sbjct: 69 act 71
>RF00696;mir-203;AADN02003787.1/117406-117485 9031:Gallus gallus
(chicken)
Length = 80
Score = 85.7 bits (43), Expect = 1e-16
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccact 71
>RF00696;mir-203;CT027758.7/42576-42497 7955:Danio rerio
(zebrafish)
Length = 80
Score = 77.8 bits (39), Expect = 3e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAVX01234553.1/1127-1048 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 77.8 bits (39), Expect = 3e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||| | ||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 13 cagtggttctaatcagttcaacagttctctatcgaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;ABQO010581221.1/929-850 9315:Macropus eugenii
(tammar wallaby)
Length = 80
Score = 69.9 bits (35), Expect = 6e-12
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctattaaaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;BAAE01000181.1/2185-2106 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 60.0 bits (30), Expect = 6e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
||||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 71
>RF00696;mir-203;AAVX01626047.1/560-639 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 19 tgggtccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttagga 78
||||| |||||||| | ||||||||||||||||| || ||||||||||||||||||
Sbjct: 7 tgggtgcagtggttttcaacagttcaacagttctttattaacattgtgaaatgtttagga 66
Query: 79 ccact 83
|||||
Sbjct: 67 ccact 71
>RF00696;mir-203;BX255913.8/25815-25737 7955:Danio rerio
(zebrafish)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 26 agtggttcttaacagttcaacagttct 52
||||||||| |||||||||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttct 40
