miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00749;mir-208;ABRQ01113272.1/13457-13378 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 115 bits (58), Expect = 7e-26
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 1 tgacgggcgagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaag 60
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 6 tgacaggcgagcttttagcccgggttatacctgacgctcacgtataagacgagcaaaaag 65
Query: 61 cttgttggtc 70
||||||||||
Sbjct: 66 cttgttggtc 75
>RF00749;mir-208;AAFR03022200.1/17966-18045 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 80
Score = 75.8 bits (38), Expect = 6e-14
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 9 gagcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaagcttgttgg 68
|||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 14 gagcttttggtccgggttatacctgatgcatgtgtataagacgagcaaaaagctcgttgg 73
Query: 69 tc 70
||
Sbjct: 74 tc 75
>RF00749;mir-208;AAPN01031605.1/4571-4492 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 73.8 bits (37), Expect = 2e-13
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 10 agcttttggcccgggttatacctgatgctcacgtataagacgagcaaaaagcttgttggt 69
|||||||||||| | |||||||||| || |||||||||||||||||||||||||||||
Sbjct: 15 agcttttggcccagattatacctgacattcccgtataagacgagcaaaaagcttgttggt 74
Query: 70 c 70
|
Sbjct: 75 c 75
>RF00749;mir-208;AAWZ01038372.1/11370-11288 28377:Anolis
carolinensis (green anole)
Length = 83
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 gtataagacgagcaaaaagcttgttggt 69
||||||||||||||||||||||||||||
Sbjct: 50 gtataagacgagcaaaaagcttgttggt 77
