miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00749;mir-208;AAKN02019132.1/109134-109213 10141:Cavia
porcellus (domestic guinea pig)
Length = 80
Score = 125 bits (63), Expect = 8e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgaattatgtttctgatccgaatataagacgaacaaaa 60
||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 4 cctctcaggaaagctttttgctcgaattatgtttctcatccaaatataagacgaacaaaa 63
Query: 61 ggtttgtctgagggc 75
|||||||||||||||
Sbjct: 64 ggtttgtctgagggc 78
>RF00749;mir-208;ABRQ01358819.1/2881-2802 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 111 bits (56), Expect = 1e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgaattatgtttctgatccgaatataagacgaacaaaa 60
|||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct: 4 cctctcagggaagctttttgctcgcgttatgtttcttatttgaatataagacgaacaaaa 63
Query: 61 ggtttgtctgagggca 76
||||||||||||||||
Sbjct: 64 ggtttgtctgagggca 79
>RF00749;mir-208;ABRT010337019.1/103-26 9478:Tarsius syrichta
(Philippine tarsier)
Length = 78
Score = 99.6 bits (50), Expect = 5e-21
Identities = 68/73 (93%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 1 cctctcagggaagctttttgctcgaattatgtttctgatccgaatataagacgaacaaaa 60
|||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct: 4 cctctcagggaagctttttgctcgaattatgtttctcattcgaatataagacgaccaaa- 62
Query: 61 ggtttgtctgagg 73
||||||||||||
Sbjct: 63 -gtttgtctgagg 74
