miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00679;mir-210;ABRQ01325237.1/532-437 9813:Procavia capensis (cape
rock hyrax)
Length = 96
Score = 149 bits (75), Expect = 9e-36
Identities = 90/95 (94%)
Strand = Plus / Plus
Query: 14 tccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgcgt 73
|||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 tccaggtgcagggcagcccctgcccaccgcacactgcgctgctccggacccactgtgcgt 60
Query: 74 gtgacagcggctgatctgtgcctgggcagcgcgac 108
||||||||||||||||||| ||||||| |||||||
Sbjct: 61 gtgacagcggctgatctgtccctgggctgcgcgac 95
>RF00679;mir-210;AAIY01719786.1/340-435 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 96
Score = 107 bits (54), Expect = 3e-23
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 14 tccaggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgcgt 73
|||||| ||||||||| |||||||||||||||||||| ||| ||||||||| |||||||
Sbjct: 1 tccaggtgcagggcagtccctgcccaccgcacactgctctgtgccagacccattgtgcgt 60
Query: 74 gtgacagcggctgatctgtgcctggg 99
|||||||| |||||||||| ||||||
Sbjct: 61 gtgacagctgctgatctgtccctggg 86
>RF00679;mir-210;ABGA01039697.1/954-1056 9601:Pongo abelii (Sumatran
orangutan)
Length = 103
Score = 87.7 bits (44), Expect = 3e-17
Identities = 95/103 (92%), Gaps = 8/103 (7%)
Strand = Plus / Plus
Query: 14 tccaggcgcagggc-agcccctgccc-accgcacactgcgctgcccc--agacc-cac-t 67
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||| |
Sbjct: 1 tccaggcgcagggccagcccctgccccaccgcacactgcgctgcccccaagaccacacgt 60
Query: 68 gtg-cgtgtgacagcggctgatctgtgcctg-ggcagcgcgac 108
||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 gtgccgtgtgacagcggctgatctgtgcctgaggcagcgcgac 103
>RF00679;mir-210;AJ330328.1/223-318 9606:Homo sapiens (human)
Length = 96
Score = 85.7 bits (43), Expect = 1e-16
Identities = 76/87 (87%)
Strand = Plus / Plus
Query: 16 caggcgcagggcagcccctgcccaccgcacactgcgctgccccagacccactgtgcgtgt 75
|||||||||||||| |||||||||| |||| || |||| |||| |||||||||||||
Sbjct: 3 caggcgcagggcagtacctgcccaccacacattgggctgacccaagaccactgtgcgtgt 62
Query: 76 gacagcggctgatctgtgcctgggcag 102
|||||||| |||||||||||| |||||
Sbjct: 63 gacagcggatgatctgtgcctaggcag 89
>RF00679;mir-210;AAFR03066236.1/16417-16509 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 93
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 gacccactgtgcgtgtgacagcggct 85
||||||||||||||||||||||||||
Sbjct: 44 gacccactgtgcgtgtgacagcggct 69
>RF00679;mir-210;AAWZ01009466.1/109964-109868 28377:Anolis
carolinensis (green anole)
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 cccactgtgcgtgtgacagcggct 85
||||||||||||||||||||||||
Sbjct: 50 cccactgtgcgtgtgacagcggct 73
>RF00679;mir-210;BAAE01058508.1/297-393 8090:Oryzias latipes
(Japanese medaka)
Length = 97
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 cagacccactgtgcgtgtgacagcggct 85
|||| |||||||||||||||||||||||
Sbjct: 46 cagatccactgtgcgtgtgacagcggct 73
>RF00679;mir-210;AL928892.6/129366-129463 7955:Danio rerio
(zebrafish)
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ccactgtgcgtgtgacagcggct 85
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>RF00679;mir-210;CAAB01000590.1/23908-23811 31033:Takifugu
rubripes
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ccactgtgcgtgtgacagcggct 85
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
>RF00679;mir-210;AAVX01157710.1/252-349 7868:Callorhinchus milii
(ghost shark)
Length = 98
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 ccactgtgcgtgtgacagcggct 85
|||||||||||||||||||||||
Sbjct: 52 ccactgtgcgtgtgacagcggct 74
