miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00646;mir-204;AY866210.1/448-549 9600:Pongo pygmaeus (Bornean
orangutan)
Length = 102
Score = 178 bits (90), Expect = 1e-44
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 8 gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 67
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gccatgtgacttgtggacttccctttgtcatccttcgcctagggctctgagcagggcagg 68
Query: 68 gacagcaaaggggtgctcagttgtcacttcccac 101
||||||||||||||||||||||||||||||||||
Sbjct: 69 gacagcaaaggggtgctcagttgtcacttcccac 102
>RF00646;mir-204;AAGW01512306.1/1681-1580 9986:Oryctolagus
cuniculus (rabbit)
Length = 102
Score = 155 bits (78), Expect = 1e-37
Identities = 90/94 (95%)
Strand = Plus / Plus
Query: 1 tcacctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagca 60
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 2 tcacctggccatgtgactggtgggcttccctttgtcatcctttgcctagggttctgagca 61
Query: 61 gggcagggacagcaaaggggtgctcagttgtcac 94
|||||||||||||||||||||||||||| |||||
Sbjct: 62 gggcagggacagcaaaggggtgctcagtcgtcac 95
>RF00646;mir-204;ABRQ01444608.1/1068-1169 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 139 bits (70), Expect = 8e-33
Identities = 88/94 (93%)
Strand = Plus / Plus
Query: 8 gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 67
|||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 9 gccatgtgacctgtgggcttccctttgtcatcctttgcctagggctctgagtggggcagg 68
Query: 68 gacagcaaaggggtgctcagttgtcacttcccac 101
|||||||||||| |||||||||||||| ||||||
Sbjct: 69 gacagcaaagggctgctcagttgtcacctcccac 102
>RF00646;mir-204;AAQQ01222771.1/904-1005 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 102
Score = 135 bits (68), Expect = 1e-31
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 10 catgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcaggga 69
||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||
Sbjct: 11 catgtgacttgtgggcttccctttgtcatcctttgcctagggctttgagtggggcaggga 70
Query: 70 cagcaaaggggtgctcagttgtcacttcccac 101
||||||||||||||||||| ||||| ||||||
Sbjct: 71 cagcaaaggggtgctcagtcgtcacctcccac 102
>RF00646;mir-204;AAKN02016253.1/66521-66421 10141:Cavia porcellus
(domestic guinea pig)
Length = 101
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 8 gccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagg 67
|||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 9 gccacgtgacttgtgggcttccctttgtcatcctttgcctagggctctga-tagggcagg 67
Query: 68 gacagcaaaggggtgctcagttgtcac 94
||| |||||||||| ||||||||||||
Sbjct: 68 gactgcaaaggggtactcagttgtcac 94
>RF00646;mir-204;AANN01198559.1/1392-1493 9365:Erinaceus europaeus
(western European hedgehog)
Length = 102
Score = 111 bits (56), Expect = 2e-24
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
||||||||||||||||||||||||||||||| |||||||| | |||| ||||||||||||
Sbjct: 13 tgtgacttgtgggcttccctttgtcatcctttgcctagggttatgagtagggcagggaca 72
Query: 72 gcaaaggggtgc 83
||||||||||||
Sbjct: 73 gcaaaggggtgc 84
>RF00646;mir-204;AAHY01062369.1/281-180 10090:Mus musculus (house
mouse)
Length = 102
Score = 93.7 bits (47), Expect = 4e-19
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
|||||| |||||||||||||||||||||||| ||||||| ||||||| |||| |||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctttgcctaggcctctgagtgaggcaaggaca 72
Query: 72 gcaaaggggtgctcagttgtcac 94
||||||||| ||||||| |||||
Sbjct: 73 gcaaaggggggctcagtggtcac 95
>RF00646;mir-204;AAGV020630976.1/4916-5016 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 101
Score = 85.7 bits (43), Expect = 1e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 5 ctggccatgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggc 64
||||||||| ||| |||||||||||||||||||||||| ||||| || || ||| ||||
Sbjct: 6 ctggccatgggacctgtgggcttccctttgtcatcctttgccta-ggatccgagtggggc 64
Query: 65 agggacagcaaaggggtgctcag 87
||||||| |||||||||||||||
Sbjct: 65 agggacaacaaaggggtgctcag 87
>RF00646;mir-204;AAFR03022736.1/24229-24330 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 67.9 bits (34), Expect = 3e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 11 atgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggac 70
||||||| ||||||||||||||||||||||| |||| | || ||| ||||||||||
Sbjct: 12 atgtgacctgtgggcttccctttgtcatcctatgcctggaaatcagagtggggcagggac 71
Query: 71 agcaaaggggtgctcagttgtc 92
||||||||| ||||||| ||||
Sbjct: 72 agcaaagggatgctcagctgtc 93
>RF00646;mir-204;CAAE01014555.1/947630-947730 99883:Tetraodon
nigroviridis
Length = 101
Score = 63.9 bits (32), Expect = 4e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
|||||| ||||||||||||||||||||||| |||| | |||| || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggaca 71
Query: 72 gcaaaggggtgctcag 87
|||||||| |||||||
Sbjct: 72 gcaaagggatgctcag 87
>RF00646;mir-204;BAAE01064700.1/3191-3291 8090:Oryzias latipes
(Japanese medaka)
Length = 101
Score = 61.9 bits (31), Expect = 2e-09
Identities = 71/83 (85%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
|||||| ||||||||||||||||||||||| |||| | ||| || | ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagct-tggataaggcagggaca 71
Query: 72 gcaaaggggtgctcagttgtcac 94
|||||||| ||||||| ||||||
Sbjct: 72 gcaaagggatgctcagctgtcac 94
>RF00646;mir-204;AAWZ01036299.1/27929-27828 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 60.0 bits (30), Expect = 6e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 14 tgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagc 73
|||| ||||||||||||||||||||||| |||| | | || || ||||||||||||
Sbjct: 15 tgacctgtgggcttccctttgtcatcctatgcctggagatcgcagagaggcagggacagc 74
Query: 74 aaaggggtgctcag 87
||||||||||||||
Sbjct: 75 aaaggggtgctcag 88
>RF00646;mir-204;AADN02040397.1/21108-21007 9031:Gallus gallus
(chicken)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 68/81 (83%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatccttcgcctagggctctgagcagggcagggaca 71
|||||| ||||||||||||||||||||||| |||| | | || || ||||||||||
Sbjct: 13 tgtgacctgtgggcttccctttgtcatcctatgcctggagatcacagtgaggcagggaca 72
Query: 72 gcaaaggggtgctcagttgtc 92
|||||||| ||||||| ||||
Sbjct: 73 gcaaagggatgctcagctgtc 93
>RF00646;mir-204;AANH01001574.1/139065-138965 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 21 tgggcttccctttgtcatccttcgcctagggctctgagcagggcagggacagcaaagggg 80
||||||||||||||||||||| |||| | |||| || | ||||||||||||||||||
Sbjct: 22 tgggcttccctttgtcatcctatgcctggagctcgga-taaggcagggacagcaaaggga 80
Query: 81 tgctca 86
||||||
Sbjct: 81 tgctca 86
>RF00646;mir-204;AAFR03028287.1/51900-52003 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 104
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 ccatgtgacttgtgggcttccctttgtcatcct 41
|||||||||| |||| |||||||||||||||||
Sbjct: 10 ccatgtgactcgtggacttccctttgtcatcct 42
>RF00646;mir-204;BX323080.10/77917-77816 7955:Danio rerio
(zebrafish)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 catgtgacttgtgggcttccctttgtcatcct 41
|||||||| ||||| |||||||||||||||||
Sbjct: 11 catgtgacctgtggacttccctttgtcatcct 42
>RF00646;mir-204;AANH01001880.1/194334-194437 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 catgtgacttgtgggcttccctttgtcatcct 41
|||||||||| ||| |||||||||||||||||
Sbjct: 11 catgtgacttatggccttccctttgtcatcct 42
>RF00646;mir-204;ABPM01009536.1/476-373 106582:Maylandia zebra
(zebra mbuna)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 gccatgtgacttgtgggcttccctttgtcatcct 41
|||||||||| | ||| |||||||||||||||||
Sbjct: 9 gccatgtgacatatggacttccctttgtcatcct 42
>RF00646;mir-204;AANH01011880.1/65628-65527 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 10 catgtgacttgtgggcttccctttgtcatccttcgcct 47
|||||||| ||||| ||||||||||||||||| ||||
Sbjct: 11 catgtgacccgtgggtttccctttgtcatcctttgcct 48
>RF00646;mir-204;AAVX01164390.1/969-1070 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 tgtgacttgtgggcttccctttgtcatcct 41
|||||| |||||| ||||||||||||||||
Sbjct: 13 tgtgacctgtgggtttccctttgtcatcct 42