miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28332_ggo-mir-216:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctcacga 109
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccctcacga 110
>28533_hsa-mir-216a:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctcacga 109
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccctcacga 110
>30119_ppa-mir-216:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctcacga 109
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccctcacga 110
>31408_lca-mir-216:mirbase
Length = 110
Score = 186 bits (94), Expect = 2e-48
Identities = 107/110 (97%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctcacga 109
|||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttcctagccctcacga 110
>30909_ppy-mir-216:mirbase
Length = 110
Score = 178 bits (90), Expect = 5e-46
Identities = 106/110 (96%), Gaps = 1/110 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctcacga 109
|||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttccttgccctcacga 110
>27811_mml-mir-216a:mirbase
Length = 110
Score = 170 bits (86), Expect = 1e-43
Identities = 102/106 (96%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctc 105
|||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 61 cagtggtctctgggattacgctaaacagagcaatttccttgccctc 106
>34041_ssc-mir-216:mirbase
Length = 105
Score = 161 bits (81), Expect = 1e-40
Identities = 100/105 (95%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccct 104
|||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttccttgccct 105
>26775_cfa-mir-216a:mirbase
Length = 105
Score = 153 bits (77), Expect = 3e-38
Identities = 99/105 (94%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacaatccccca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccct 104
|||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatatccttgccct 105
>33292_bta-mir-216a:mirbase
Length = 109
Score = 141 bits (71), Expect = 1e-34
Identities = 99/107 (92%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct: 1 gatggctgtgagttggcttaatctcagctggcaactgtgagatgttcatacagtcctcca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttcctagccctca 106
|||||||||||||||||| |||||||||||||| |||| |||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatctccttgccctca 107
>27430_mdo-mir-216:mirbase
Length = 97
Score = 129 bits (65), Expect = 5e-31
Identities = 90/97 (92%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
||||||||||| |||||||| ||||||||||||||||||||||||| ||| | |||||||
Sbjct: 1 gatggctgtgaattggcttaatctcagctggcaactgtgagatgttaataaattccctca 60
Query: 60 cagtggtctctgggattaaactaaacagagcaatttc 96
|||||||||||||||||| |||||||||||||||||
Sbjct: 61 cagtggtctctgggattatgctaaacagagcaatttc 97
>32806_rno-mir-216a:mirbase
Length = 106
Score = 101 bits (51), Expect = 1e-22
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgagatgttcatacaatccctcacagtggtctctgggattaaa 79
||||||||||||||||||||||||| | || || |||||||||||||||||||||||
Sbjct: 21 atctcagctggcaactgtgagatgtccctatcattcctcacagtggtctctgggattatg 80
Query: 80 ctaaacagagcaatttcct 98
|||||||||||||||||||
Sbjct: 81 ctaaacagagcaatttcct 99
>25835_xtr-mir-216:mirbase
Length = 91
Score = 85.7 bits (43), Expect = 6e-18
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 3 tggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctcaca 61
||||||||| |||||||| |||||||||||||||||||| ||| ||| | | ||||||
Sbjct: 1 tggctgtgaattggcttaatctcagctggcaactgtgagcagttaataaattatctcaca 60
Query: 62 gtggtctctgggattaaactaaacagagcaa 92
|||||||||||||||| |||||||| |||||
Sbjct: 61 gtggtctctgggattatactaaacacagcaa 91
>27099_eca-mir-216a:mirbase
Length = 58
Score = 83.8 bits (42), Expect = 2e-17
Identities = 56/58 (96%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgagatgttcatacaatccctcacagtggtctctgggatta 77
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 3 atctcagctggcaactgtgagatgttcata-aatccc-cacagtggtctctgggatta 58
>31943_mmu-mir-216a:mirbase
Length = 72
Score = 75.8 bits (38), Expect = 6e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgagatgttcatacaatccctcacagtggtctctgggatta 77
||||||||||||||||||||||||| | || || |||||||||||||||||||||||
Sbjct: 9 atctcagctggcaactgtgagatgtccctatcattcctcacagtggtctctgggatta 66
>26003_gga-mir-216:mirbase
Length = 106
Score = 67.9 bits (34), Expect = 1e-12
Identities = 84/97 (86%), Gaps = 4/97 (4%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctca 59
||||||||||| |||||||| |||||||||||||||||||| ||| || ||| ||||
Sbjct: 1 gatggctgtgaattggcttaatctcagctggcaactgtgagcagttaat--aat-tctca 57
Query: 60 cagtggtctctgggattaaactaaacagagcaatttc 96
||||||| |||||||||| ||||||| |||||||||
Sbjct: 58 cagtggtatctgggattatgctaaacacagcaatttc 94
>31536_oan-mir-216:mirbase
Length = 123
Score = 56.0 bits (28), Expect = 5e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 1 gatggctgtgagttggctta-tctcagctggcaactgtgagatg 43
||||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 12 gatggctgtgaatcggcttaatctcagctggcaactgtgagatg 55
>26511_tgu-mir-216a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 9 tgagttggctta-tctcagctggcaactgtgag 40
|||||||||||| ||||||||||||||||||||
Sbjct: 1 tgagttggcttaatctcagctggcaactgtgag 33
>24696_bfl-mir-216:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 11 atctcagctggcaactgtgag 31
>25528_pma-mir-216a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 14 atctcagctggcaactgtgag 34
>34369_dre-mir-216a-1:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 17 atctcagctggcaactgtgag 37
>34370_dre-mir-216a-2:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 17 atctcagctggcaactgtgag 37
>34637_fru-mir-216a:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 9 atctcagctggcaactgtgag 29
>34785_tni-mir-216a:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgag 40
|||||||||||||||||||||
Sbjct: 9 atctcagctggcaactgtgag 29
