miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;AAGW01552079.1/8729-8641 9986:Oryctolagus
cuniculus (rabbit)
Length = 89
Score = 129 bits (65), Expect = 8e-30
Identities = 84/89 (94%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctcacag 62
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ggctgtgagttggcttaatctcagctggcaactgtgagatattcatacaatccctcacag 60
Query: 63 tggtctctgggattaaactaaacagagca 91
||||||||||| ||| ||||||||||||
Sbjct: 61 tggtctctggggttatgctaaacagagca 89
>RF00654;mir-216;AALT01617626.1/3023-3113 42254:Sorex araneus
(European shrew)
Length = 91
Score = 101 bits (51), Expect = 2e-21
Identities = 69/74 (93%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 20 atctcagctggcaactgtgagatgttcatacaat--ccctcacagtggtctctgggatta 77
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 18 atctcagctggcaactgtgagatgttcatacaattccccccacagtggtctctgggatta 77
Query: 78 aactaaacagagca 91
||||||||||||
Sbjct: 78 tgctaaacagagca 91
>RF00654;mir-216;ABRQ01364796.1/1315-1227 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 97.6 bits (49), Expect = 3e-20
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctcacag 62
||||||||||||||||| |||||||||||||||||||| ||| | | || ||||||||||
Sbjct: 1 ggctgtgagttggcttaatctcagctggcaactgtgagctgtccctccagtccctcacag 60
Query: 63 tggtctctgggattaaactaaacagagca 91
|||||||||||||| ||||||||||||
Sbjct: 61 tggtctctgggattcggctaaacagagca 89
>RF00654;mir-216;AAHY01091760.1/5719-5631 10090:Mus musculus
(house mouse)
Length = 89
Score = 89.7 bits (45), Expect = 7e-18
Identities = 79/89 (88%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctcacag 62
|||| |||||||| ||| |||||||||||||||||||||||| | || || ||||||||
Sbjct: 1 ggctatgagttggtttaatctcagctggcaactgtgagatgtccttatcattcctcacag 60
Query: 63 tggtctctgggattaaactaaacagagca 91
||||||||||||||| ||||||||||||
Sbjct: 61 tggtctctgggattatgctaaacagagca 89
>RF00654;mir-216;AAIY01552317.1/295-382 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 88
Score = 65.9 bits (33), Expect = 1e-10
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgagatgttcatacaatccctcacag 62
||||||| | ||||||| |||||||||||||||||||| ||||| | |||| ||||||||
Sbjct: 1 ggctgtgggctggcttaatctcagctggcaactgtgagctgttcgtgcaat-cctcacag 59
Query: 63 tggtctctgggattaaactaaacagagca 91
||| |||||||| || ||| ||||||||
Sbjct: 60 tggcctctgggactatgctacacagagca 88
>RF00654;mir-216;AADN02046841.1/23280-23195 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 36/38 (94%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgag 40
|||||||| |||||||| ||||||||||||||||||||
Sbjct: 1 ggctgtgaattggcttaatctcagctggcaactgtgag 38
>RF00654;mir-216;AAPN01112677.1/27856-27944 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 50.1 bits (25), Expect = 6e-06
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 4 ggctgtgagttggctta-tctcagctggcaactgtgagatg 43
|||||||| | |||||| |||||||||||||||||||||||
Sbjct: 1 ggctgtgaatcggcttaatctcagctggcaactgtgagatg 41
