miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28534_hsa-mir-216b:mirbase
Length = 82
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
Query: 61 gtagagattctacagtctgac 81
|||||||||||||||||||||
Sbjct: 61 gtagagattctacagtctgac 81
>27812_mml-mir-216b:mirbase
Length = 82
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttaccc 60
Query: 61 gtagagattctacagtctgac 81
|||||||||||||||||||||
Sbjct: 61 gtagagattctacagtctgac 81
>30910_ppy-mir-216b:mirbase
Length = 82
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttaccc 60
Query: 61 gtagagattctacagtctgac 81
|||||||||||||||||||||
Sbjct: 61 gtagagattctacagtctgac 81
>27100_eca-mir-216b:mirbase
Length = 86
Score = 145 bits (73), Expect = 5e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 4 gcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttaccc 63
Query: 61 gtagagattctacagtctgac 81
|||||||||||||||||||||
Sbjct: 64 gtagagattctacagtctgac 84
>33293_bta-mir-216b:mirbase
Length = 82
Score = 145 bits (73), Expect = 5e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttaccc 60
Query: 61 gtagagattctacagtctgac 81
|||||||||||||||||||||
Sbjct: 61 gtagagattctacagtctgac 81
>31944_mmu-mir-216b:mirbase
Length = 86
Score = 121 bits (61), Expect = 8e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 4 gcagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacct 63
Query: 61 gtagagattctacagtctgac 81
||||||||||| |||||||||
Sbjct: 64 gtagagattcttcagtctgac 84
>32807_rno-mir-216b:mirbase
Length = 102
Score = 121 bits (61), Expect = 8e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10 gcagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttactt 69
Query: 61 gtagagattctacagtctgac 81
||||||||||| |||||||||
Sbjct: 70 gtagagattcttcagtctgac 90
>32808_rno-mir-216b:mirbase
Length = 102
Score = 121 bits (61), Expect = 8e-29
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 10 gcagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttactt 69
Query: 61 gtagagattctacagtctgac 81
||||||||||| |||||||||
Sbjct: 70 gtagagattcttcagtctgac 90
>26776_cfa-mir-216b:mirbase
Length = 62
Score = 105 bits (53), Expect = 5e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 11 aaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccgtagagattc 70
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 aaatctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagattc 60
Query: 71 t 71
|
Sbjct: 61 t 61
>27306_eca-mir-1461:mirbase
Length = 56
Score = 95.6 bits (48), Expect = 4e-21
Identities = 54/56 (96%)
Strand = Plus / Minus
Query: 13 atctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccgtagagat 68
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 56 atctctgcaggcaaatgtgatgtcactaaagaaatcacacacttacccgtagagat 1
>26004_gga-mir-216b:mirbase
Length = 89
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccg 61
|||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
Query: 62 tagagattctacagtctg 79
||||||||||||| ||||
Sbjct: 67 tagagattctacaatctg 84
>26005_gga-mir-216c:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccg 61
|||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |
Sbjct: 81 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 22
Query: 62 tagagattctacagtctg 79
||||||||||||| ||||
Sbjct: 21 tagagattctacaatctg 4
>26512_tgu-mir-216b:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactggaaaatctctgcaggcaaatgtgatgtc 36
|||||||| |||||||||||||||| |||||||||
Sbjct: 2 cagactgggaaatctctgcaggcaagtgtgatgtc 36
>25334_csa-mir-216b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatgtca 37
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtca 42
>34371_dre-mir-216b-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatgt 35
||||||||||||||| ||||||||
Sbjct: 12 aatctctgcaggcaactgtgatgt 35
>34372_dre-mir-216b-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatgt 35
||||||||||||||| ||||||||
Sbjct: 11 aatctctgcaggcaactgtgatgt 34
>34638_fru-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatg 34
||||||||||||||| |||||||
Sbjct: 10 aatctctgcaggcaactgtgatg 32
>34786_tni-mir-216b:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatg 34
||||||||||||||| |||||||
Sbjct: 10 aatctctgcaggcaactgtgatg 32
