miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00654;mir-216;ABRO01106143.1/1589-1501 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 89
Score = 125 bits (63), Expect = 9e-29
Identities = 75/79 (94%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaagaaatcacacacttaccc 65
Query: 61 gtagagattctacagtctg 79
||||||||| |||||||
Sbjct: 66 acagagattcttcagtctg 84
>RF00654;mir-216;BX284627.4/32714-32802 10090:Mus musculus (house
mouse)
Length = 89
Score = 121 bits (61), Expect = 1e-27
Identities = 76/81 (93%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 6 gcagactgggaaatctctgcaggcaaatgtgatgtcactgaagaaaccacacacttacct 65
Query: 61 gtagagattctacagtctgac 81
||||||||||| |||||||||
Sbjct: 66 gtagagattcttcagtctgac 86
>RF00654;mir-216;AALT01617623.1/4047-4135 42254:Sorex araneus
(European shrew)
Length = 89
Score = 117 bits (59), Expect = 2e-26
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 3 agactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccgt 62
||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 8 agactggaaaatctctgcaggcaaatgtgatgtcactaaataattcacacacttacccgt 67
Query: 63 agagattctacagtctgac 81
||||||||| |||||||||
Sbjct: 68 agagattcttcagtctgac 86
>RF00654;mir-216;AAKN02040735.1/24209-24296 10141:Cavia porcellus
(domestic guinea pig)
Length = 88
Score = 113 bits (57), Expect = 3e-25
Identities = 76/81 (93%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 6 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaag-aatcacacacttacct 64
Query: 61 gtagagattctacagtctgac 81
||| ||||||| |||||||||
Sbjct: 65 gtaaagattctgcagtctgac 85
>RF00654;mir-216;AAIY01782907.1/856-768 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 89
Score = 89.7 bits (45), Expect = 5e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| |||||||||||||||||||||| || ||| |||||||||||||| |||
Sbjct: 6 gcagactgggaaatctctgcaggcaaatgtgacgttgctgccgaaatcacacacttgccc 65
Query: 61 gtagagattctacagtctgac 81
|||||||| || |||||||||
Sbjct: 66 gtagagatgctgcagtctgac 86
>RF00654;mir-216;ABRQ01364800.1/1509-1421 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 89.7 bits (45), Expect = 5e-18
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct: 6 gcagactggaaaatctctgcaggcaaatgtgatgtcatgaaagaaaccacacacttacct 65
Query: 61 gtagagattctacagtctgac 81
|||||||| || | |||||||
Sbjct: 66 gtagagatgctgcggtctgac 86
>RF00654;mir-216;AAFR03002982.1/16332-16244 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 89
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/81 (86%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| ||||||||||||||||||||| |||| || | |||||||| ||||||
Sbjct: 6 gcagactgggaaatctctgcaggcaaatgtggtgtcgctatagttatcacacaattaccc 65
Query: 61 gtagagattctacagtctgac 81
||||||||||| || ||||||
Sbjct: 66 gtagagattctgcaatctgac 86
>RF00654;mir-216;AADN02046841.1/28673-28585 9031:Gallus gallus
(chicken)
Length = 89
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 2 cagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttacccg 61
|||||||| |||||||||||||||||||||||||| | | |||| |||| ||||| |
Sbjct: 7 cagactgggaaatctctgcaggcaaatgtgatgtctttatagcaatctcacaattacctg 66
Query: 62 tagagattctacagtctg 79
||||||||||||| ||||
Sbjct: 67 tagagattctacaatctg 84
>RF00654;mir-216;AAPN01112677.1/19396-19484 9258:Ornithorhynchus
anatinus (platypus)
Length = 89
Score = 61.9 bits (31), Expect = 1e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 1 gcagactggaaaatctctgcaggcaaatgtgatgtcactgaggaaatcacacacttaccc 60
||||||||| |||||||||| |||||||||| |||||| | | |||| |||| |||||
Sbjct: 6 gcagactgggaaatctctgctggcaaatgtggtgtcacggtagcaatcgcacaattacct 65
Query: 61 gtagagattct 71
|||||||||||
Sbjct: 66 gtagagattct 76
>RF00654;mir-216;AAWZ01022334.1/1559-1470 28377:Anolis
carolinensis (green anole)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 cagactggaaaatctctgcaggcaaatgtgatgtc 36
||||||| ||||||||||||||||||||||||||
Sbjct: 7 cagactgagaaatctctgcaggcaaatgtgatgtc 41
>RF00654;mir-216;AAVX01147466.1/944-1031 7868:Callorhinchus milii
(ghost shark)
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cagactggaaaatctctgcaggcaaatgtga 32
||||||||| ||||||||||||||| |||||
Sbjct: 7 cagactggataatctctgcaggcaactgtga 37
>RF00654;mir-216;AACT01058314.1/9825-9745 51511:Ciona savignyi
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 12 aatctctgcaggcaaatgtgatgtca 37
||||||||||||||| ||||||||||
Sbjct: 17 aatctctgcaggcaactgtgatgtca 42
