miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00673;mir-217;AAGW01552079.1/597-492 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 178 bits (90), Expect = 1e-44
Identities = 102/105 (97%), Gaps = 2/105 (1%)
Strand = Plus / Plus
Query: 5 taattattacatagtttttgatgtcgcagatactgcatcaggaactgattggataagaat 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 taattattaca--gtttttgatgtcgcagatactgcatcaggaactgattggataagaat 61
Query: 65 cagtcaccatcagttcctaatgcattgccttcagcatctaaacaa 109
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctgtcaccatcagttcctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AAPY01560156.1/2469-2364 37347:Tupaia belangeri
(northern tree shrew)
Length = 106
Score = 170 bits (86), Expect = 2e-42
Identities = 101/106 (95%)
Strand = Plus / Plus
Query: 4 ataattattacatagtttttgatgtcgcagatactgcatcaggaactgattggataagaa 63
|||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 ataactattacacagcttttgatgtcgcggatactgcatcaggaactgattggataagaa 60
Query: 64 tcagtcaccatcagttcctaatgcattgccttcagcatctaaacaa 109
|| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcggtcaccatcagttcctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AAEX02023028.1/182472-182367 9615:Canis lupus
familiaris (dog)
Length = 106
Score = 168 bits (85), Expect = 9e-42
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 17 agtttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatca 76
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14 agtttttgatgtcgcagatactgcatcaggaactgattggataagaatgggtcaccatca 73
Query: 77 gttcctaatgcattgccttcagcatctaaacaa 109
|||||||||||||||||||||||||||||||||
Sbjct: 74 gttcctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AADN02046841.1/20616-20511 9031:Gallus gallus
(chicken)
Length = 106
Score = 168 bits (85), Expect = 9e-42
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 17 agtttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatca 76
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14 agttcttgatgtcgcagatactgcatcaggaactgattggataataatcagtcaccatca 73
Query: 77 gttcctaatgcattgccttcagcatctaaacaa 109
|||||||||||||||||||||||||||||||||
Sbjct: 74 gttcctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AAQR01685763.1/646-752 30611:Otolemur garnettii
(small-eared galago)
Length = 107
Score = 157 bits (79), Expect = 4e-38
Identities = 89/91 (97%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 20 ttttgatgtcgcagatactgcatcagg-aactgattggataagaatcagtcaccatcagt 78
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 17 ttttgatgtcgcagatactgcatcagggaactgattggataagaatcagtcaccatcagt 76
Query: 79 tcctaatgcattgccttcagcatctaaacaa 109
|||| ||||||||||||||||||||||||||
Sbjct: 77 tcctcatgcattgccttcagcatctaaacaa 107
>RF00673;mir-217;AALT01617638.1/400-505 42254:Sorex araneus
(European shrew)
Length = 106
Score = 147 bits (74), Expect = 3e-35
Identities = 86/90 (95%)
Strand = Plus / Plus
Query: 20 ttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagtt 79
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 17 ttttgatgtcgtagatactgcatcaggaactgattggataaaaatgggtcaccatcagtt 76
Query: 80 cctaatgcattgccttcagcatctaaacaa 109
||||||||||||||||||||||||||||||
Sbjct: 77 cctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AANN01395868.1/718-823 9365:Erinaceus europaeus
(western European hedgehog)
Length = 106
Score = 133 bits (67), Expect = 5e-31
Identities = 85/91 (93%)
Strand = Plus / Plus
Query: 19 tttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagt 78
|||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||
Sbjct: 16 tttttgatgtcgtagatactgcatcaggaactgattgtataagaatgtgccaccatcagt 75
Query: 79 tcctaatgcattgccttcagcatctaaacaa 109
|||||||||||| ||||||||||||||||||
Sbjct: 76 tcctaatgcattaccttcagcatctaaacaa 106
>RF00673;mir-217;AAWZ01022332.1/98697-98592 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 20 ttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagtt 79
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 17 ttttgatgtcgcagatactgcatcaggaactgattggggaataatcatgtaccatcagtt 76
Query: 80 cctaatgcattgccttcagcatctaaacaa 109
||||||||||||||||||||||||||||||
Sbjct: 77 cctaatgcattgccttcagcatctaaacaa 106
>RF00673;mir-217;AAIY01412982.1/1242-1137 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 123 bits (62), Expect = 5e-28
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 20 ttttgatgtcgcagatactgcatcaggaactgattggataagaatcagtcaccatcagtt 79
||||||||| |||| ||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct: 17 ttttgatgttgcaggtactgcatcaggaactgatcggataagtatctgtcaccatcagtt 76
Query: 80 cctaatgcattgccttcagcatctaa 105
||||||||| ||||||||||||||||
Sbjct: 77 cctaatgcactgccttcagcatctaa 102
>RF00673;mir-217;ABRQ01669115.1/1422-1321 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 123 bits (62), Expect = 5e-28
Identities = 93/102 (91%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 8 ttattacatagtttttgatgtcgcagatactgcatcaggaactgattggataagaatcag 67
|||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| ||| |
Sbjct: 2 ttattacagagtttttgatgtcgcaggtactgcatcaggaaatgactggataaatatctg 61
Query: 68 tcaccatcagttcctaatgcattgccttcagcatctaaacaa 109
|||||||||| | |||||||||||||||||||||||||||||
Sbjct: 62 tcaccatcagct-ctaatgcattgccttcagcatctaaacaa 102
>RF00673;mir-217;AAGU02318163.1/3864-3759 9785:Loxodonta africana
(African savanna elephant)
Length = 106
Score = 99.6 bits (50), Expect = 7e-21
Identities = 92/106 (86%)
Strand = Plus / Plus
Query: 4 ataattattacatagtttttgatgtcgcagatactgcatcaggaactgattggataagaa 63
|||||| ||||| ||||||||| || |||| ||||||||||||||||||| || |||| |
Sbjct: 1 ataatttttacagagtttttgacgttgcaggtactgcatcaggaactgatcggttaagta 60
Query: 64 tcagtcaccatcagttcctaatgcattgccttcagcatctaaacaa 109
|| ||||| ||| |||||||||| ||||||||||||||||||||
Sbjct: 61 tccgtcactgtcaattcctaatgcgctgccttcagcatctaaacaa 106
>RF00673;mir-217;BX321898.29/71915-71810 7955:Danio rerio
(zebrafish)
Length = 106
Score = 60.0 bits (30), Expect = 6e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 33 gatactgcatcaggaactgattggataagaatcagtcaccatcagttcctaatgcattgc 92
|||||||||||||||||||||||||| | | |||| |||||||||||| ||||| | |
Sbjct: 30 gatactgcatcaggaactgattggatgatattcaggagccatcagttcctgatgcactcc 89
Query: 93 cttcagcatc 102
| ||||||||
Sbjct: 90 catcagcatc 99
>RF00673;mir-217;CAAB01000324.1/13656-13761 31033:Takifugu
rubripes
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 gatactgcatcaggaactgattgg 56
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;AANH01005109.1/22353-22248 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 gatactgcatcaggaactgattgg 56
||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattgg 53
>RF00673;mir-217;BAAE01230814.1/1025-922 8090:Oryzias latipes
(Japanese medaka)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 33 gatactgcatcaggaactgattgg 56
||||||||||||||||||||||||
Sbjct: 28 gatactgcatcaggaactgattgg 51
>RF00673;mir-217;ABEP02005709.1/2697-2622 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 tactgcatcaggaactgattggat 58
||||||||||||||||||||||||
Sbjct: 11 tactgcatcaggaactgattggat 34
