miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00251;mir-219;ABRO01040016.1/7191-7262 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 72
Score = 119 bits (60), Expect = 8e-27
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 15 gctcctgattgtccaaacgcaattctcgagtctatggctccggctgagagttgagtctgg 74
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct: 1 gctcttgattgtccaaacgcaattctcgagtctatggctccggccgagagttgggtctgg 60
Query: 75 acgtcccgagcc 86
||||||||||||
Sbjct: 61 acgtcccgagcc 72
>RF00251;mir-219;AAFR03043752.1/856-788 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 gctcctgattgtccaaacgcaattctcg 42
||||||||||||||||||||||||||||
Sbjct: 1 gctcctgattgtccaaacgcaattctcg 28
>RF00251;mir-219;AADN02026640.1/6422-6348 9031:Gallus gallus
(chicken)
Length = 75
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 gctcctgattgtccaaacgcaattct 40
||||||||||||||||||||||||||
Sbjct: 1 gctcctgattgtccaaacgcaattct 26
>RF00251;mir-219;AAWZ01042166.1/945-878 28377:Anolis carolinensis
(green anole)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 tcctgattgtccaaacgcaattct 40
||||||||||||||||||||||||
Sbjct: 3 tcctgattgtccaaacgcaattct 26
>RF00251;mir-219;BAAE01000431.1/3148-3074 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattctcgagt 45
|||||||||||||||||||||| ||||
Sbjct: 5 ctgattgtccaaacgcaattcttgagt 31
>RF00251;mir-219;AAJJ01000028.1/33047-32979 7070:Tribolium
castaneum (red flour beetle)
Length = 69
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 18 cctgattgtccaaacgcaattct 40
|||||||||||||||||||||||
Sbjct: 4 cctgattgtccaaacgcaattct 26
>RF00251;mir-219;ABRQ01073340.1/6903-6975 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;FP067442.4/5562-5494 7955:Danio rerio (zebrafish)
Length = 69
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;CR848045.10/89252-89178 7955:Danio rerio
(zebrafish)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;CAAB01001740.1/22605-22679 31033:Takifugu
rubripes
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;ABPN01064052.1/58-131 163638:Rhamphochromis esox
Length = 74
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;AANH01012160.1/2138-2064 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;AANH01004623.1/138672-138748 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;ABEP02034803.1/1504-1571 7739:Branchiostoma
floridae (Florida lancelet)
Length = 68
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;AAWU01002102.1/48923-48993 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 71
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;AAGE02015776.1/56998-57072 7159:Aedes aegypti
(yellow fever mosquito)
Length = 75
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
>RF00251;mir-219;ABKP02018537.1/25428-25503 377271:Anopheles
gambiae M
Length = 76
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 ctgattgtccaaacgcaattct 40
||||||||||||||||||||||
Sbjct: 5 ctgattgtccaaacgcaattct 26
