miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00651;mir-221;AADN02010981.1/2588-2657 9031:Gallus gallus
(chicken)
Length = 70
Score = 119 bits (60), Expect = 8e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 20 catgaacctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgc 79
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 1 catgaacctggcatacaatgtagatttctgtgtttgttaagcaacagctacattgtctgc 60
Query: 80 tgggtttc 87
||||||||
Sbjct: 61 tgggtttc 68
>RF00651;mir-221;AAYZ01618848.1/488-419 9978:Ochotona princeps
(American pika)
Length = 70
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 22 tgaacctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctg 81
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtattttctgggcaacagctacattgtctgctg 62
Query: 82 ggtttcag 89
||||||||
Sbjct: 63 ggtttcag 70
>RF00651;mir-221;AALT01657316.1/439-370 42254:Sorex araneus
(European shrew)
Length = 70
Score = 79.8 bits (40), Expect = 7e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 22 tgaacctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctg 81
||||||||||| ||||||||||||||||| || || |||||||||||||||||||||
Sbjct: 3 tgaacctggcacacaatgtagatttctgtatttatttaacaacagctacattgtctgctg 62
Query: 82 ggtttcag 89
||||||||
Sbjct: 63 ggtttcag 70
>RF00651;mir-221;BAAE01085056.1/1241-1173 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 67.9 bits (34), Expect = 3e-11
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 22 tgaacctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctg 81
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct: 3 tgaacctggcatacaatgtagatttctgtgtt-tcaattctacagctacattgtctgctg 61
Query: 82 ggtttc 87
||||||
Sbjct: 62 ggtttc 67
>RF00651;mir-221;BAAE01342535.1/103-172 8090:Oryzias latipes
(Japanese medaka)
Length = 70
Score = 65.9 bits (33), Expect = 1e-10
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 25 acctggcatacaatgtagatttctgtgttcgttaggcaacagctacattgtctgctgggt 84
|||||||||||| ||||| |||||||| ||| | | ||||||||||||||||||||||
Sbjct: 6 acctggcatacagtgtagtattctgtgtgcgtccgtctacagctacattgtctgctgggt 65
Query: 85 ttcag 89
|||||
Sbjct: 66 ttcag 70
>RF00651;mir-221;CU550700.7/20157-20229 7955:Danio rerio
(zebrafish)
Length = 73
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 acagctacattgtctgctgggtttcag 89
|||||||||||||||||||||||||||
Sbjct: 47 acagctacattgtctgctgggtttcag 73
