miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28337_ggo-mir-223:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
>28544_hsa-mir-223:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
>30124_ppa-mir-223:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
>30918_ppy-mir-223:mirbase
Length = 110
Score = 202 bits (102), Expect = 4e-53
Identities = 108/110 (98%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttagacactccgtgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
>27108_eca-mir-223:mirbase
Length = 104
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 5 gcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggta 65
Query: 65 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 104
>27821_mml-mir-223:mirbase
Length = 110
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgtggt 63
Query: 64 agagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtgcggcatatgcttaccag 110
>27628_sla-mir-223:mirbase
Length = 110
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgctta 106
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61 ggtagagtgtcagtttgtcaaataccccaagtgcgacacatgctta 106
>26784_cfa-mir-223:mirbase
Length = 103
Score = 180 bits (91), Expect = 1e-46
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 1 cctggcctcctgcagtgccacactccgtgtatttgacaagctgagttagacactccatgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggaagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
>32819_rno-mir-223:mirbase
Length = 110
Score = 153 bits (77), Expect = 3e-38
Identities = 98/105 (93%)
Strand = Plus / Plus
Query: 2 ctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtg 61
||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2 ctggccttctgcagtgttacgctccgtgtatttgacaagctgagttggacactctgtgtg 61
Query: 62 gtagagtgtcagtttgtcaaataccccaagtgcggcacatgctta 106
|||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 62 gtagagtgtcagtttgtcaaataccccaagtgtggctcatgctta 106
>31953_mmu-mir-223:mirbase
Length = 110
Score = 147 bits (74), Expect = 2e-36
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagagtg 69
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 10 ctgcagtgtcacgctccgtgtatttgacaagctgagttggacactctgtgtggtagagtg 69
Query: 70 tcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||| ||| |||||
Sbjct: 70 tcagtttgtcaaataccccaagtgtggctcatgc 103
>33303_bta-mir-223:mirbase
Length = 108
Score = 143 bits (72), Expect = 3e-35
Identities = 93/99 (93%), Gaps = 2/99 (2%)
Strand = Plus / Plus
Query: 5 gcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggta 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 5 gcctcctgcagtgccatgctccgtgtatttgacaagctgagttggacactccatgtagt- 63
Query: 65 gagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||| |||| ||||
Sbjct: 64 -agtgtcagtttgtcaaataccccaagtgtggcatatgc 101
>27436_mdo-mir-223:mirbase
Length = 111
Score = 141 bits (71), Expect = 1e-34
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 tcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagag 67
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 12 tccttcagtgccacactccgtgtatttgacaagctgagttggacactccgtgtcgtagag 71
Query: 68 tgtcagtttgtcaaataccccaagtgcggca 98
|||||||||||||||||||||||||| ||||
Sbjct: 72 tgtcagtttgtcaaataccccaagtgaggca 102
>31544_oan-mir-223:mirbase
Length = 124
Score = 119 bits (60), Expect = 4e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 12 gcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtgg-tagagtgt 70
|||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 20 gcagtgccgcgctccgtgtatttgacaagctgagttggacactccgtgtggtttgagtgt 79
Query: 71 cagtttgtcaaataccccaagtgcggca 98
||||||||||||||||| ||||| ||||
Sbjct: 80 cagtttgtcaaataccctaagtgaggca 107
>26013_gga-mir-223:mirbase
Length = 100
Score = 101 bits (51), Expect = 1e-22
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 26 cgtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatac 85
|||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||
Sbjct: 17 cgtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatac 76
Query: 86 cccaagtgcggcacatgct 104
|||||||| ||||| ||||
Sbjct: 77 cccaagtgaggcacttgct 95
>25842_xtr-mir-223:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 4e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcaatgagacagagtgtcagtttgtcaaatacc 73
Query: 87 ccaagtgcggcac 99
||||||| |||||
Sbjct: 74 ccaagtgaggcac 86
>25669_xla-mir-223:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 1e-16
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
Query: 87 ccaagtgcggcac 99
||||||| |||||
Sbjct: 74 ccaagtgaggcac 86
>26520_tgu-mir-223:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 4e-16
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
|||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||
Sbjct: 1 gtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatacc 59
Query: 87 ccaagtgcggca 98
||||||| ||||
Sbjct: 60 ccaagtgaggca 71
>34795_tni-mir-223:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 9e-11
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
||||||||||||||||| ||| ||||||| | | ||||||||||||||||||||||
Sbjct: 16 gtgtatttgacaagctgtgtttgacactctgtatctgcgagtgtcagtttgtcaaatacc 75
Query: 87 ccaagtg 93
|||||||
Sbjct: 76 ccaagtg 82
>34647_fru-mir-223:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 65 gagtgtcagtttgtcaaataccccaagtg 93
|||||||||||||||||||||||||||||
Sbjct: 45 gagtgtcagtttgtcaaataccccaagtg 73
>34384_dre-mir-223:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 gtgtcagtttgtcaaataccccaag 91
|||||||||||||||||||||||||
Sbjct: 70 gtgtcagtttgtcaaataccccaag 94
