miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00664;mir-223;AY866256.1/405-514 9544:Macaca mulatta (rhesus
monkey)
Length = 110
Score = 196 bits (99), Expect = 4e-50
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 4 ggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccgtgtggt 63
Query: 64 agagtgtcagtttgtcaaataccccaagtgcggcacatgcttaccag 110
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 64 agagtgtcagtttgtcaaataccccaagtgcggcatatgcttaccag 110
>RF00664;mir-223;AAKN02052886.1/11821-11930 10141:Cavia porcellus
(domestic guinea pig)
Length = 110
Score = 168 bits (85), Expect = 1e-41
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 11 tgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagagtgt 70
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tgcagtaccacactccgtgtatttgacaagctgagttggacactccatgtggtagagtgt 70
Query: 71 cagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||||||||||||
Sbjct: 71 cagtttgtcaaataccccaagtgcggcacatgc 103
>RF00664;mir-223;AAIY01539231.1/5018-5127 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 110
Score = 153 bits (77), Expect = 6e-37
Identities = 92/97 (94%)
Strand = Plus / Plus
Query: 7 ctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtaga 66
|||||||||||||||||||||||||||||| || |||| || ||||||||||||||||||
Sbjct: 7 ctcctgcagtgccacgctccgtgtatttgataaactgaattagacactccatgtggtaga 66
Query: 67 gtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||||||||||||||||||||||||||||||| |||||
Sbjct: 67 gtgtcagtttgtcaaataccccaagtgcggctcatgc 103
>RF00664;mir-223;AL831708.9/47299-47408 10090:Mus musculus (house
mouse)
Length = 110
Score = 147 bits (74), Expect = 3e-35
Identities = 89/94 (94%)
Strand = Plus / Plus
Query: 10 ctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagagtg 69
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 10 ctgcagtgtcacgctccgtgtatttgacaagctgagttggacactctgtgtggtagagtg 69
Query: 70 tcagtttgtcaaataccccaagtgcggcacatgc 103
|||||||||||||||||||||||| ||| |||||
Sbjct: 70 tcagtttgtcaaataccccaagtgtggctcatgc 103
>RF00664;mir-223;AAFR03059733.1/784-675 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 110
Score = 141 bits (71), Expect = 2e-33
Identities = 86/91 (94%)
Strand = Plus / Plus
Query: 8 tcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagag 67
|||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 8 tccttcagtgccacactccgtgtatttgacaagctgagttggacactccgtgtcgtagag 67
Query: 68 tgtcagtttgtcaaataccccaagtgcggca 98
|||||||||||||||||||||||||| ||||
Sbjct: 68 tgtcagtttgtcaaataccccaagtgaggca 98
>RF00664;mir-223;AANN01684196.1/3693-3802 9365:Erinaceus europaeus
(western European hedgehog)
Length = 110
Score = 141 bits (71), Expect = 2e-33
Identities = 92/99 (92%)
Strand = Plus / Plus
Query: 6 cctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtag 65
|||| |||| || ||||||||||||||||||||||||||||| |||||||||| ||| ||
Sbjct: 6 cctcttgcaatgtcacgctccgtgtatttgacaagctgagttagacactccatatggaag 65
Query: 66 agtgtcagtttgtcaaataccccaagtgcggcacatgct 104
||||||||||||||||||||||||||||||||| |||||
Sbjct: 66 agtgtcagtttgtcaaataccccaagtgcggcatatgct 104
>RF00664;mir-223;AALT01652710.1/2269-2378 42254:Sorex araneus
(European shrew)
Length = 110
Score = 139 bits (70), Expect = 8e-33
Identities = 82/86 (95%)
Strand = Plus / Plus
Query: 13 cagtgccacgctccgtgtatttgacaagctgagttggacactccatgtggtagagtgtca 72
||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 13 cagtgtcacactccgcgtatttgacaagctgaattggacactccatgtggtagagtgtca 72
Query: 73 gtttgtcaaataccccaagtgcggca 98
||||||||||||||||||||||||||
Sbjct: 73 gtttgtcaaataccccaagtgcggca 98
>RF00664;mir-223;AAPN01125420.1/2697-2806 9258:Ornithorhynchus
anatinus (platypus)
Length = 110
Score = 119 bits (60), Expect = 8e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 12 gcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtgg-tagagtgt 70
|||||||| |||||||||||||||||||||||||||||||||||| ||||| | ||||||
Sbjct: 13 gcagtgccgcgctccgtgtatttgacaagctgagttggacactccgtgtggtttgagtgt 72
Query: 71 cagtttgtcaaataccccaagtgcggca 98
||||||||||||||||| ||||| ||||
Sbjct: 73 cagtttgtcaaataccctaagtgaggca 100
>RF00664;mir-223;ABRQ01452788.1/6932-7041 9813:Procavia capensis
(cape rock hyrax)
Length = 110
Score = 117 bits (59), Expect = 3e-26
Identities = 92/103 (89%)
Strand = Plus / Plus
Query: 1 cctggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgt 60
|||||||||||||||||| | ||| ||||||||||| ||||||||||||||||| |||||
Sbjct: 1 cctggcctcctgcagtgctatgctacgtgtatttgataagctgagttggacacttcatgt 60
Query: 61 ggtagagtgtcagtttgtcaaataccccaagtgcggcacatgc 103
||| |||||||||||||||||||| | |||| | ||||||||
Sbjct: 61 tgtacagtgtcagtttgtcaaatactctaagtacagcacatgc 103
>RF00664;mir-223;AAQR01675055.1/2409-2518 30611:Otolemur garnettii
(small-eared galago)
Length = 110
Score = 111 bits (56), Expect = 2e-24
Identities = 86/96 (89%)
Strand = Plus / Plus
Query: 3 tggcctcctgcagtgccacgctccgtgtatttgacaagctgagttggacactccatgtgg 62
||||||||||||||||||| ||| |||||||||||| ||||||| | |||||| | |
Sbjct: 3 tggcctcctgcagtgccacactctgtgtatttgacaggctgagtggaacactcagtttaa 62
Query: 63 tagagtgtcagtttgtcaaataccccaagtgcggca 98
||||||||||||||||||||||||||||||||||||
Sbjct: 63 tagagtgtcagtttgtcaaataccccaagtgcggca 98
>RF00664;mir-223;AADN02013066.1/26830-26939 9031:Gallus gallus
(chicken)
Length = 110
Score = 101 bits (51), Expect = 2e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 26 cgtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatac 85
|||||||||||||||||||||| ||||||| | ||| ||||||||||||||||||||||
Sbjct: 26 cgtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtcaaatac 85
Query: 86 cccaagtgcggcacatgct 104
|||||||| ||||| ||||
Sbjct: 86 cccaagtgaggcacttgct 104
>RF00664;mir-223;BAAF04035315.1/6268-6159 8090:Oryzias latipes
(Japanese medaka)
Length = 110
Score = 85.7 bits (43), Expect = 1e-16
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
||||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctatctctgtgagtgtcagtttgtcaaatacc 86
Query: 87 ccaagtg 93
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;ABQF01018329.1/6784-6677 59729:Taeniopygia
guttata
Length = 108
Score = 83.8 bits (42), Expect = 4e-16
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 26 cgtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatac 85
||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct: 26 cgtgtatttgacaagctgagtccgacactcagtgtgc-agagtgtcagtttgtcaaatac 84
Query: 86 cccaagtgcggcac 99
|||||||| |||||
Sbjct: 85 cccaagtgaggcac 98
>RF00664;mir-223;AANH01000582.1/391608-391499 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 77.8 bits (39), Expect = 3e-14
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
||||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtatctctgagtgtcagtttgtcaaatacc 86
Query: 87 ccaagtg 93
|||||||
Sbjct: 87 ccaagtg 93
>RF00664;mir-223;CAAB01000001.1/273051-272942 31033:Takifugu
rubripes
Length = 110
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 65 gagtgtcagtttgtcaaataccccaagtg 93
|||||||||||||||||||||||||||||
Sbjct: 65 gagtgtcagtttgtcaaataccccaagtg 93
>RF00664;mir-223;BX465863.11/57630-57739 7955:Danio rerio
(zebrafish)
Length = 110
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 67 gtgtcagtttgtcaaataccccaag 91
|||||||||||||||||||||||||
Sbjct: 67 gtgtcagtttgtcaaataccccaag 91
