miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30920_ppy-mir-296:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 1 aggacccttccggagggnnnnnnntcaatcctgttgtgcctaattcagagggttgggtgg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggacccttccggagggccccccctcaatcctgttgtgcctaattcagagggttgggtgg 60
Query: 61 aggctctcctgaagggctc 79
|||||||||||||||||||
Sbjct: 61 aggctctcctgaagggctc 79
>30921_ppy-mir-296:mirbase
Length = 80
Score = 115 bits (58), Expect = 5e-27
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 1 aggacccttccggagggnnnnnnntcaatcctgttgtgcctaattcagagggttgggtgg 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggacccttccggagggccccccctcaatcctgttgtgcctaattcagagggttgggtgg 60
Query: 61 aggctctcctgaagggctc 79
|||||||||||||||||||
Sbjct: 61 aggctctcctgaagggctc 79
>27823_mml-mir-296:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
>27824_mml-mir-296:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
>28546_hsa-mir-296:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
>28547_hsa-mir-296:mirbase
Length = 80
Score = 109 bits (55), Expect = 3e-25
Identities = 55/55 (100%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
>31966_mmu-mir-296:mirbase
Length = 79
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24 tcaatcctgttgtgctcgcttcagagggttgggtggaggctctcctgaagg 74
>31967_mmu-mir-296:mirbase
Length = 79
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24 tcaatcctgttgtgctcgcttcagagggttgggtggaggctctcctgaagg 74
>32831_rno-mir-296:mirbase
Length = 78
Score = 69.9 bits (35), Expect = 2e-13
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 24 tcaatcctgttgtgctcgcttcagagggttgggtggaggctctcctgaagg 74
>27110_eca-mir-296:mirbase
Length = 78
Score = 67.9 bits (34), Expect = 1e-12
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||| | ||||||||||||||||||||||| |||||||||
Sbjct: 25 caatcctgttgtgtttgattcagagggttgggtggaggctttcctgaagg 74
>33306_bta-mir-296:mirbase
Length = 78
Score = 61.9 bits (31), Expect = 6e-11
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaaggg 76
|||||||||||||| | |||||||||||||| ||||||| ||||||||||
Sbjct: 25 caatcctgttgtgcttggttcagagggttgggcggaggctttcctgaaggg 75
>34049_ssc-mir-296:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 2e-10
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
|||||||||||||| ||||||||||||||| ||||||| |||||||||
Sbjct: 23 caatcctgttgtgctggattcagagggttgggcggaggctttcctgaagg 72
