miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00733;mir-296;AAGU02888703.1/420-499 9785:Loxodonta africana
(African savanna elephant)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 25 tcaatcctgttgtgcctgattcagagggttgggtggaggctttcctgaagggctc 79
>RF00733;mir-296;ACBE01090665.1/1549-1470 9685:Felis catus
(domestic cat)
Length = 80
Score = 75.8 bits (38), Expect = 7e-14
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 26 caatcctgttgtgctcaattcagagggttgggtggaggctttcctgaaaggctc 79
>RF00733;mir-296;AAEX02023972.1/68459-68536 9615:Canis lupus
familiaris (dog)
Length = 78
Score = 73.8 bits (37), Expect = 3e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggct 78
|||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 25 caatcctgttgtgctggattcagagggttgggtggaggctttcctgaagggct 77
>RF00733;mir-296;AAHY01013218.1/37512-37591 10090:Mus musculus
(house mouse)
Length = 80
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 25 tcaatcctgttgtgctcgcttcagagggttgggtggaggctctcctgaagg 75
>RF00733;mir-296;AAKN02054782.1/64637-64559 10141:Cavia porcellus
(domestic guinea pig)
Length = 79
Score = 69.9 bits (35), Expect = 4e-12
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct: 25 tcaatcctgttgtgctaagttcagagggttgggtggaggctctccagaagg 75
>RF00733;mir-296;ABRQ01222255.1/4888-4807 9813:Procavia capensis
(cape rock hyrax)
Length = 82
Score = 60.0 bits (30), Expect = 4e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 46 cagagggttgggtggaggctctcctgaagggctc 79
|||||||||||||||||||| |||||||||||||
Sbjct: 48 cagagggttgggtggaggctttcctgaagggctc 81
>RF00733;mir-296;ABDC01114716.1/6053-5974 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 25 tcaatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagg 75
||||||||||||| | || |||||||||||| |||||||||||||||||
Sbjct: 25 tcaatcctgttgtactagatccagagggttgggcggaggctctcctgaagg 75
>RF00733;mir-296;AAIY01647257.1/5704-5626 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 26 caatcctgttgtgcctaattcagagggttgggtggaggctctcctgaagggc 77
|||||||||||||||| ||||||| ||||| |||||| |||||||||||
Sbjct: 26 caatcctgttgtgcctgggtcagaggattggggagaggctttcctgaagggc 77
