miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00756;mir-299;ABDC01257670.1/1456-1394 30608:Microcebus murinus
(gray mouse lemur)
Length = 63
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Minus
Query: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 63 aagaaatggtttaccgtcccacatacattttctatatgtatgtgggacggtaaaccgctt 4
Query: 61 ctt 63
|||
Sbjct: 3 ctt 1
Score = 73.8 bits (37), Expect = 2e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaacc 56
||||||||||||||||||||| | ||| |||||||||||||||||||||
Sbjct: 8 ggtttaccgtcccacatacatatagaaaatgtatgtgggacggtaaacc 56
>RF00756;mir-299;AAGU02503119.1/1549-1611 9785:Loxodonta africana
(African savanna elephant)
Length = 63
Score = 109 bits (55), Expect = 4e-24
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggatggtaaaccactt 60
Query: 61 ctt 63
|||
Sbjct: 61 ctt 63
Score = 71.9 bits (36), Expect = 9e-13
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaacc 56
||||| ||||||||| |||||||||||| || || |||||||||||||||||||||
Sbjct: 63 aagaagtggtttaccatcccacatacatattcaaaatgtatgtgggacggtaaacc 8
>RF00756;mir-299;CAAA01169866.1/64-2 10090:Mus musculus (house
mouse)
Length = 63
Score = 79.8 bits (40), Expect = 4e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 aagaaatggtttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgctt 60
||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct: 1 aagaaatggtttaccgtcccacatacattttgagtattgttgtgggacggtgaaccgctt 60
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 36 atgtatgtgggacggtaaacc 56
|||||||||||||||||||||
Sbjct: 28 atgtatgtgggacggtaaacc 8
>RF00756;mir-299;AAIY01428934.1/3553-3616 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 64
Score = 73.8 bits (37), Expect = 2e-13
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 11 ttaccgtcccacatacattttgaatatgtatgtgggacggtaaaccgcttctt 63
||||||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 12 ttaccgtcccacatacattttagatgtgtatgtgggatggtaaaccgcttctt 64
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 8 ggtttaccgtcccacatacattttgaatatgtatgtgggacggtaa 53
|||||||| ||||||||||| | || ||||||||||||||||||
Sbjct: 57 ggtttaccatcccacatacacatctaaaatgtatgtgggacggtaa 12
