miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>30926_ppy-mir-300:mirbase
Length = 83
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 61
Query: 61 cagactctctctggggagcaaa 82
||||||||||||||||||||||
Sbjct: 62 cagactctctctggggagcaaa 83
>28552_hsa-mir-300:mirbase
Length = 83
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2 gctacttgaagagaggtaatccttcacgcatttgctttacttgcaatgattatacaaggg 61
Query: 61 cagactctctctggggagcaaa 82
||||||||||||||||||||||
Sbjct: 62 cagactctctctggggagcaaa 83
>31979_mmu-mir-300:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||| |||||| || |||||||||| | ||||| ||| ||||||
Sbjct: 1 gctacttgaagagaggttatcctttgtgtgtttgctttacgcgaaatgaatatgcaaggg 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
>32835_rno-mir-300:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||| |||||| || |||||||||| | ||||| ||| ||||||
Sbjct: 1 gctacttgaagagaggttatcctttgtgtgtttgctttacgcgaaatgaatatgcaaggg 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
>32836_rno-mir-300:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 1e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||| |||||| || |||||||||| | ||||| ||| ||||||
Sbjct: 1 gctacttgaagagaggttatcctttgtgtgtttgctttacgcgaaatgaatatgcaaggg 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
>26787_cfa-mir-300:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttc 25
||||||||||||||||| |||||||
Sbjct: 1 gctacttgaagagaggttatccttc 25
