miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;CABD01018504.1/22087-22165 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 79
Score = 149 bits (75), Expect = 6e-36
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
Query: 61 cagactctctctggggagc 79
||||||| |||||||||||
Sbjct: 61 cagactccctctggggagc 79
>RF00641;mir-154;AANU01197805.1/79709-79785 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 91.7 bits (46), Expect = 1e-18
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 5 cttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaagggcaga 64
||||||||||||||||||| | ||| |||| |||||||||||||||||||||| ||||||
Sbjct: 5 cttgaagagaggtaatcctccctgcttttggtttacttgcaatgattatacaaaggcaga 64
Query: 65 ctctct 70
||||||
Sbjct: 65 ctctct 70
>RF00641;mir-154;AAWR02020065.1/30944-31022 9796:Equus caballus
(horse)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
|||||||||| |||| | ||| |||||| ||||| ||| ||| ||||| | ||||||||
Sbjct: 1 gctacttgaaaagagattatctttcatgtgtttgcgttatttgtaatgaatctacaaggg 60
Query: 61 cagactctctctggggagc 79
||| ||| ||||| |||||
Sbjct: 61 caggctccctctgaggagc 79
>RF00641;mir-154;AC121784.2/119847-119925 10090:Mus musculus
(house mouse)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 1 gctacttgaagagaggtaatccttcatgcatttgctttacttgcaatgattatacaaggg 60
||||||||||||||||| |||||| || |||||||||| | ||||| ||| ||||||
Sbjct: 1 gctacttgaagagaggttatcctttgtgtgtttgctttacgcgaaatgaatatgcaaggg 60
Query: 61 ca 62
||
Sbjct: 61 ca 62
