miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;FJ234838.1/106075-106199 29664:Brachypodium
sylvaticum
Length = 125
Score = 85.7 bits (43), Expect = 2e-16
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 31 tccgtcccatgttaagtgactttctgttacatgtatcttaacgtttttaaggcataaata 90
|||||||||| |||| ||||||||| |||||||||||| ||| |||| | ||||| |||
Sbjct: 114 tccgtcccatattaattgactttctattacatgtatctagacgctttttaagcatagata 55
Query: 91 cattcatatttggtcaaatttgagtca 117
||| ||||||||| |||||||||||||
Sbjct: 54 catccatatttggacaaatttgagtca 28
>RF00906;MIR1122;EF059989.1/365637-365513 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 31 tccgtcccatgttaagtgactttctgttacatgtatcttaacgtttttaaggcataaata 90
|||||||||| |||| ||||||||| ||||||| |||| || ||||| ||||||| |||
Sbjct: 114 tccgtcccatattaaatgactttctattacatgcatctagacattttttaggcatagata 55
Query: 91 cattcatatttggtcaaatttgagtca 117
||| |||||||| | ||||||||||||
Sbjct: 54 catccatatttgattaaatttgagtca 28
>RF00906;MIR1122;EF059989.1/56206-56082 29664:Brachypodium
sylvaticum
Length = 125
Score = 77.8 bits (39), Expect = 4e-14
Identities = 75/87 (86%)
Strand = Plus / Plus
Query: 31 tccgtcccatgttaagtgactttctgttacatgtatcttaacgtttttaaggcataaata 90
|||||||| | |||||||||||||| |||||||||||| || |||| || |||| |||
Sbjct: 12 tccgtcccgtattaagtgactttctattacatgtatctagacactttttagacatagata 71
Query: 91 cattcatatttggtcaaatttgagtca 117
||| ||||||||| |||||||||||||
Sbjct: 72 catccatatttggacaaatttgagtca 98
>RF00906;MIR1122;EU730901.1/58586-58463 15368:Brachypodium
distachyon
Length = 124
Score = 69.9 bits (35), Expect = 1e-11
Identities = 75/87 (86%), Gaps = 1/87 (1%)
Strand = Plus / Minus
Query: 31 tccgtcccatgttaagtgactttctgttacatgtatcttaacgtttttaaggcataaata 90
|||||||||| ||||||||||| || ||| |||||||| ||||||||| || ||| |||
Sbjct: 113 tccgtcccatattaagtgacttcctatta-atgtatctaaacgttttttagccatttata 55
Query: 91 cattcatatttggtcaaatttgagtca 117
||| ||||| ||| |||||||||||||
Sbjct: 54 catccatatctggacaaatttgagtca 28
>RF00906;MIR1122;EU730900.1/18513-18389 15368:Brachypodium
distachyon
Length = 125
Score = 60.0 bits (30), Expect = 9e-09
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttggtcaaatttgag 114
|||||||||||| |||| |||| ||||||| |||||| ||||||||| |||||||||
Sbjct: 38 ttacatgtatctaaacgctttttaggcatagatacatccatatttgggaaaatttgag 95
>RF00906;MIR1122;EF059989.1/24895-24770 29664:Brachypodium
sylvaticum
Length = 126
Score = 54.0 bits (27), Expect = 6e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 31 tccgtcccatgttaagtgactttctgttacatgtatcttaacgtttt 77
||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct: 12 tccgtcccaaattaagtgactttctattacatgtatctagacgtttt 58
>RF00906;MIR1122;EU730899.1/90906-91030 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttggtcaaatttgag 114
|||||||||||| || |||| ||| ||| |||||||||| ||||||||||||||||
Sbjct: 38 ttacatgtatctagacactttttaggaatagatacattcatttttggtcaaatttgag 95
>RF00906;MIR1122;EF059989.1/67137-67261 29664:Brachypodium
sylvaticum
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttggtcaaatttgag 114
|||||||||||| |||| |||| | ||||| |||||| ||||||||| ||| ||||||
Sbjct: 88 ttacatgtatctaaacgctttttacgcatatatacatccatatttgggcaattttgag 31
>RF00906;MIR1122;EU730901.1/161594-161470 15368:Brachypodium
distachyon
Length = 125
Score = 52.0 bits (26), Expect = 2e-06
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttggtcaaatttgag 114
|||||||||||| ||| |||| ||||||| |||||| ||||| ||| ||||||||||
Sbjct: 88 ttacatgtatctagacgctttttaggcatagatacatccatatctgggcaaatttgag 31
>RF00906;MIR1122;EU730895.1/40339-40463 15368:Brachypodium
distachyon
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 83 cataaatacattcatatttggtcaaatttgag 114
|||| ||||||||||||||| |||||||||||
Sbjct: 64 catagatacattcatatttgatcaaatttgag 95
>RF00906;MIR1122;EF059989.1/352416-352302 29664:Brachypodium
sylvaticum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttgg 103
|||||||||||| |||||||| | ||||| |||||| |||||||||
Sbjct: 78 ttacatgtatctagacgttttttatgcatagatacatccatatttgg 32
>RF00906;MIR1122;EU730895.1/43836-43713 15368:Brachypodium
distachyon
Length = 124
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 57 ttacatgtatcttaacgtttttaaggcataaatacattcatatttggtcaaatttgag 114
|||||||||||| | | |||| ||| ||| |||||| ||||||||| ||||||||||
Sbjct: 87 ttacatgtatctagatgctttttaggtatagatacatccatatttgggcaaatttgag 30
