miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27831_mml-mir-302a:mirbase
Length = 69
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
||||||||
Sbjct: 61 tggtgatg 68
>28555_hsa-mir-302a:mirbase
Length = 69
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
||||||||
Sbjct: 61 tggtgatg 68
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactcaaaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
| ||||||
Sbjct: 61 tagtgatg 68
>27115_eca-mir-302a:mirbase
Length = 68
Score = 111 bits (56), Expect = 6e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactataaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
| ||||||
Sbjct: 61 tagtgatg 68
>33310_bta-mir-302a:mirbase
Length = 70
Score = 95.6 bits (48), Expect = 4e-21
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
|||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 2 ccaccacttaaacgtggatgtacttgctttatagctaaaaaagtaagtgcttccatgttt 61
Query: 61 tggtgatg 68
| ||||||
Sbjct: 62 tagtgatg 69
>31982_mmu-mir-302a:mirbase
Length = 69
Score = 87.7 bits (44), Expect = 9e-19
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||| |||||||||||| | |||| ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggttgtacttgctttagacctaagaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
||||||||
Sbjct: 61 tggtgatg 68
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
|||| |||||||||||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2 ccactacttaaacgtggatttacttgctttgtttctaaaaaagtaagtgcttccatgttt 61
Query: 61 tggtgatg 68
| ||||||
Sbjct: 62 tagtgatg 69
>30928_ppy-mir-302b:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 37 aaagaagtaagtgcttccatgtttt 61
|||||||||||||||||||||||||
Sbjct: 43 aaagaagtaagtgcttccatgtttt 67
>31546_oan-mir-302-1:mirbase
Length = 126
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttttggtgatg 68
||||||||||||||||||||| ||||||
Sbjct: 75 aagtaagtgcttccatgttttagtgatg 102
>27439_mdo-mir-302b:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gtaagtgcttccatgttttggt 64
||||||||||||||||||||||
Sbjct: 44 gtaagtgcttccatgttttggt 65
>26018_gga-mir-302b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 43 aagtaagtgcttccatgtttt 63
>26020_gga-mir-302d:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
>27832_mml-mir-302b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 47 aagtaagtgcttccatgtttt 67
>28556_hsa-mir-302b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 44 aagtaagtgcttccatgtttt 64
>30311_ptr-mir-302b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 44 aagtaagtgcttccatgtttt 64
>31547_oan-mir-302-2:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 39 aagtaagtgcttccatgtttt 59
>26017_gga-mir-302a:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 aagtgcttccatgttttggtgatg 68
||||||||||||||||| ||||||
Sbjct: 43 aagtgcttccatgttttagtgatg 66
>26019_gga-mir-302c:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 37 aagtaagtgcttccatgttt 56
>26791_cfa-mir-302b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgtttt 61
||||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgtttt 66
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>27116_eca-mir-302b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgtttt 61
||||||||||||||||||||
Sbjct: 48 agtaagtgcttccatgtttt 67
>27117_eca-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 34 aagtaagtgcttccatgttt 53
>27833_mml-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>30312_ptr-mir-302c:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
>31983_mmu-mir-302b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgtttt 61
||||||||||||||||||||
Sbjct: 46 agtaagtgcttccatgtttt 65
>33311_bta-mir-302b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 agtaagtgcttccatgtttt 61
||||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgtttt 66
>33312_bta-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttt 60
||||||||||||||||||||
Sbjct: 40 aagtaagtgcttccatgttt 59
