miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 119 bits (60), Expect = 4e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaaaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
| ||||||
Sbjct: 61 tagtgatg 68
>RF00668;mir-302;AABR04095134.1/7301-7233 10116:Rattus norvegicus
(Norway rat)
Length = 69
Score = 79.8 bits (40), Expect = 4e-15
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggttgtccttgctttggaacgaagaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
|||||||
Sbjct: 61 gggtgatg 68
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 77.8 bits (39), Expect = 2e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 18 atgtacttgctttgaaactaaagaagtaagtgcttccatgttttggtgatg 68
|||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 18 atgtgcttgctttgaaactaaaaaagtaagtgcttccatgtttttgtgatg 68
>RF00668;mir-302;AAKN02038884.1/104365-104297 10141:Cavia
porcellus (domestic guinea pig)
Length = 69
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
|||||||||||||||||| |||||||||||| || | ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtggacgtacttgctttggaagcgagaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
|||||||
Sbjct: 61 cggtgatg 68
>RF00668;mir-302;AAPY01684075.1/7919-7851 37347:Tupaia belangeri
(northern tree shrew)
Length = 69
Score = 63.9 bits (32), Expect = 2e-10
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 1 ccaccacttaaacgtgggagtacttgctttataacggggaaagtaagtgcttccatgttt 60
Query: 61 tggtgatg 68
||||||||
Sbjct: 61 tggtgatg 68
>RF00668;mir-302;AAFC03091296.1/1203-1135 9913:Bos taurus (cattle)
Length = 69
Score = 61.9 bits (31), Expect = 9e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 6 acttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccatgttt 60
|||||||| |||||||||||||||| |||||||| ||| ||| ||||||| ||||
Sbjct: 6 acttaaacatggatgtacttgctttcaaactaaaaaaggaagcgcttccaagttt 60
>RF00668;mir-302;AAWR02036366.1/23003-22935 9796:Equus caballus
(horse)
Length = 69
Score = 56.0 bits (28), Expect = 6e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgcttccat 56
|||||||||||| |||| ||| |||||||||||| |||| ||| |||| |||||||
Sbjct: 1 ccaccacttaaatgtgggtgttcttgctttgaaattaaaaaagaaagtacttccat 56
>RF00668;mir-302;AANN01319001.1/1638-1703 9365:Erinaceus europaeus
(western European hedgehog)
Length = 66
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 4 ccacttaaacgtggatgtacttgctttgaaactaaagaagtaagt 48
||||||||||||| |||| ||||||||||| ||||| ||| ||||
Sbjct: 1 ccacttaaacgtgaatgttcttgctttgaagctaaacaagaaagt 45
>RF00668;mir-302;AAPN01081641.1/13571-13636 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgttttggtgatg 68
||||||||||||||||||||| ||||||
Sbjct: 38 aagtaagtgcttccatgttttagtgatg 65
>RF00668;mir-302;AAWR02000508.1/11188-11120 9796:Equus caballus
(horse)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ccaccacttaaacgtggatgtacttgctttgaaactaaa 39
|||||||||| || |||||| ||||||||||| ||||||
Sbjct: 1 ccaccacttacacatggatgcacttgctttgacactaaa 39
>RF00668;mir-302;ABRP01133978.1/7459-7391 132908:Pteropus vampyrus
(large flying fox)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 15 tggatgtacttgctttgaaactaaagaagtaagtgcttccatgtttt 61
||||||| ||||| || ||||||| ||| |||||||||||||||||
Sbjct: 15 tggatgtgcttgcactgtaactaaaaaaggaagtgcttccatgtttt 61
>RF00668;mir-302;AAEX02017596.1/203439-203506 9615:Canis lupus
familiaris (dog)
Length = 68
Score = 46.1 bits (23), Expect = 5e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 5 cacttaaacgtggatgtacttgctttgaaactaaagaagtaagtgct 51
|||| ||| ||| |||||||||||| ||||||||| ||| |||||||
Sbjct: 5 cactcaaatgtgaatgtacttgcttggaaactaaaaaaggaagtgct 51
>RF00668;mir-302;AAFR03016534.1/30106-30172 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 gtaagtgcttccatgttttggt 64
||||||||||||||||||||||
Sbjct: 41 gtaagtgcttccatgttttggt 62
>RF00668;mir-302;ABRN01333081.1/2250-2182 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 16 ggatgtacttgctttgaaactaaagaagtaagtgctt 52
|||||| ||||||||||||||| | || |||||||||
Sbjct: 16 ggatgtgcttgctttgaaactacaaaaataagtgctt 52
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 46 aagtaagtgcttccatgtttt 66
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 46 aagtaagtgcttccatgtttt 66
>RF00668;mir-302;AADN02009328.1/24503-24571 9031:Gallus gallus
(chicken)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 41 aagtaagtgcttccatgtttt 61
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
