miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28556_hsa-mir-302b:mirbase
Length = 73
Score = 143 bits (72), Expect = 2e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatg 60
Query: 61 ttttagtaggag 72
||||||||||||
Sbjct: 61 ttttagtaggag 72
>27832_mml-mir-302b:mirbase
Length = 76
Score = 121 bits (61), Expect = 7e-29
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaa---aagtaagtgcttcc 57
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaaaataagtaagtgcttcc 60
Query: 58 atgttttagtaggag 72
|||||||||||||||
Sbjct: 61 atgttttagtaggag 75
>30928_ppy-mir-302b:mirbase
Length = 76
Score = 121 bits (61), Expect = 7e-29
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaa---aagtaagtgcttcc 57
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gctcccttcaactttaacatggaagtgctttctgtgactttaaaagaagtaagtgcttcc 60
Query: 58 atgttttagtaggag 72
|||||||||||||||
Sbjct: 61 atgttttagtaggag 75
>31547_oan-mir-302-2:mirbase
Length = 69
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 6 cttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgtttta 65
|||| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 cttctactttaacatggaggtgctttctgtgatttaaaaagtaagtgcttccatgtttta 60
Query: 66 gtag 69
||||
Sbjct: 61 gtag 64
>26018_gga-mir-302b:mirbase
Length = 72
Score = 83.8 bits (42), Expect = 1e-17
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgacttta--aaagtaagtgcttccatgttttagta 68
||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 8 actttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgttttagta 67
Query: 69 g 69
|
Sbjct: 68 g 68
>26791_cfa-mir-302b:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctcccttcaactttaacatggaagtgctttctgtgacttt---aaaagtaagtgcttcca 58
||||||| ||||||||||||||||| |||||| ||||||| || ||||||||||||||
Sbjct: 1 ctccctttaactttaacatggaagtactttctttgactttcaaaatagtaagtgcttcca 60
Query: 59 tgttttagtag 69
|||||||||||
Sbjct: 61 tgttttagtag 71
>33311_bta-mir-302b:mirbase
Length = 75
Score = 81.8 bits (41), Expect = 6e-17
Identities = 64/71 (90%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ctcccttcaactttaacatggaagtgctttctgtgacttt---aaaagtaagtgcttcca 58
||||||| ||||||||||||| ||| |||||||||||||| || ||||||||||||||
Sbjct: 1 ctccctttaactttaacatggtagtactttctgtgacttttgaaatagtaagtgcttcca 60
Query: 59 tgttttagtag 69
|||||||||||
Sbjct: 61 tgttttagtag 71
>27116_eca-mir-302b:mirbase
Length = 76
Score = 73.8 bits (37), Expect = 1e-14
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 10 aactttaacatggaagtgctttctgtgactt---taaaagtaagtgcttccatgttttag 66
|||||||||||||| |||||||||||||||| || ||||||||||||||||||||||
Sbjct: 10 aactttaacatggacgtgctttctgtgacttgcaaaatagtaagtgcttccatgttttag 69
Query: 67 tag 69
|||
Sbjct: 70 tag 72
>27439_mdo-mir-302b:mirbase
Length = 71
Score = 65.9 bits (33), Expect = 3e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 4 cccttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgttt 63
|||||| ||||||||||||| || ||||||||| | ||| ||||||||||||||||||
Sbjct: 2 cccttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttt 61
Query: 64 tagtaggag 72
| |||||||
Sbjct: 62 tggtaggag 70
>31983_mmu-mir-302b:mirbase
Length = 74
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 3 tcccttcaactttaacatggaagtgctttctgtgac-tttaaaagtaagtgcttccatgt 61
|||||||||||||||||||| | |||||||||| | | || |||||||||||||||||
Sbjct: 3 tcccttcaactttaacatgggaatgctttctgtctcatcgaagagtaagtgcttccatgt 62
Query: 62 tttagtag 69
||||||||
Sbjct: 63 tttagtag 70
>27441_mdo-mir-302d:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 5e-11
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 12 ctttaacatggaagtgctttctgtgacttt--aaaagtaagtgcttccatgttt 63
||||||||||||||||||| |||||| ||| |||| |||||||||||||||||
Sbjct: 7 ctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
>27115_eca-mir-302a:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 41 taaaagtaagtgcttccatgttttagt 67
|||||||||||||||||||||||||||
Sbjct: 38 taaaagtaagtgcttccatgttttagt 64
>31546_oan-mir-302-1:mirbase
Length = 126
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 37 actttaaaagtaagtgcttccatgttttagt 67
||||| |||||||||||||||||||||||||
Sbjct: 68 acttttaaagtaagtgcttccatgttttagt 98
>26020_gga-mir-302d:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 40 aaaagtaagtgcttccatgttttagt 65
>33310_bta-mir-302a:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 40 aaaagtaagtgcttccatgttttagt 65
>31985_mmu-mir-302d:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgttt 63
||||||||||||| | ||| ||||| ||||||| |||||||||||||||||
Sbjct: 6 actttaacatggaggcacttgctgtgcatttaaaaataagtgcttccatgttt 58
>26793_cfa-mir-302d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgactt--taaaagtaagtgcttccatgttttagt 67
||||||||||||| | ||| ||||||| | ||||| |||||||||||||||||||||
Sbjct: 6 actttaacatggaggcacttgctgtgacatgataaaaataagtgcttccatgttttagt 64
>27118_eca-mir-302d:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgacttta--aaagtaagtgcttccatgttttagt 67
||||||||||||| | ||| ||||||||| | ||| |||||||||||||||||||||
Sbjct: 6 actttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttttagt 64
>26017_gga-mir-302a:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||| ||||||||||||||||||||
Sbjct: 37 aaaagaaagtgcttccatgttttagt 62
>26019_gga-mir-302c:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 35 aaaagtaagtgcttccatgttt 56
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>27117_eca-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 32 aaaagtaagtgcttccatgttt 53
>27833_mml-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>30312_ptr-mir-302c:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>31982_mmu-mir-302a:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 aaagtaagtgcttccatgtttt 64
||||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgtttt 61
>33312_bta-mir-302c:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 38 aaaagtaagtgcttccatgttt 59
>33313_bta-mir-302d:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
|||| |||||||||||||||||||||
Sbjct: 41 aaaaataagtgcttccatgttttagt 66
>27831_mml-mir-302a:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagtaagtgcttccatgtttt 64
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
>28555_hsa-mir-302a:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagtaagtgcttccatgtttt 64
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
>30310_ptr-mir-302a:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44 aagtaagtgcttccatgtttt 64
|||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgtttt 61
