miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/61 (93%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgacttta--aaagtaagtgcttccatgttttagta 68
||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 6 actttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgttttagta 65
Query: 69 g 69
|
Sbjct: 66 g 66
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/69 (88%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 6 cttcaactttaacatggaagtgctttctgtgacttt-------aaaagtaagtgcttcca 58
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 1 cttcaactttaacatggaggtgctttctgtgactttcgttagaaaaagtaagtgcttcca 60
Query: 59 tgttttagt 67
|||||||||
Sbjct: 61 tgttttagt 69
>RF00668;mir-302;AACN010299228.1/1232-1301 9615:Canis lupus
familiaris (dog)
Length = 70
Score = 73.8 bits (37), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 10 aactttaacatggaagtgctttctgtgactttaaaa---gtaagtgcttccatgttttag 66
||||||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 5 aactttaacatggaagtactttctttgactttcaaaatagtaagtgcttccatgttttag 64
Query: 67 tag 69
|||
Sbjct: 65 tag 67
>RF00668;mir-302;AAFR03016534.1/30106-30172 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 6 cttcaactttaacatggaagtgctttctgtgactttaaaagtaagtgcttccatgtttta 65
|||| ||||||||||||| || ||||||||| | ||| |||||||||||||||||||
Sbjct: 1 cttctactttaacatggaggtactttctgtgtttaaaaaggtaagtgcttccatgttttg 60
Query: 66 gtaggag 72
|||||||
Sbjct: 61 gtaggag 67
>RF00668;mir-302;AAFR03016534.1/30625-30693 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 69
Score = 61.9 bits (31), Expect = 1e-09
Identities = 49/54 (90%), Gaps = 2/54 (3%)
Strand = Plus / Plus
Query: 12 ctttaacatggaagtgctttctgtgacttt--aaaagtaagtgcttccatgttt 63
||||||||||||||||||| |||||| ||| |||| |||||||||||||||||
Sbjct: 7 ctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
>RF00668;mir-302;ABRT010177693.1/1091-1020 9478:Tarsius syrichta
(Philippine tarsier)
Length = 72
Score = 61.9 bits (31), Expect = 1e-09
Identities = 58/67 (86%), Gaps = 5/67 (7%)
Strand = Plus / Plus
Query: 8 tcaactttaacatggaagtgctttctgtgacttt-----aaaagtaagtgcttccatgtt 62
||||||| |||||||| ||||||||||||| ||| || ||||||||||||||||||
Sbjct: 3 tcaacttaaacatggaggtgctttctgtgattttttttaaagagtaagtgcttccatgtt 62
Query: 63 ttagtag 69
|||||||
Sbjct: 63 ttagtag 69
>RF00668;mir-302;AANN01821362.1/2593-2523 9365:Erinaceus europaeus
(western European hedgehog)
Length = 71
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/62 (87%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 10 aactttaacatggaagtgctttctgtgactttaaaa----gtaagtgcttccatgtttta 65
|||||||| |||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct: 5 aactttaatgtggaagtgctttctgtgattctaaaatatagtaagtgcttccatgtttta 64
Query: 66 gt 67
||
Sbjct: 65 gt 66
>RF00668;mir-302;AC113952.9/51530-51463 10090:Mus musculus (house
mouse)
Length = 68
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 6 cttcaactttaacatggaagtgctttctgtgactttaaa-agtaagtgcttccatgtttt 64
||||||||||||||||| | |||||||||| | | || ||||||||||||||||||||
Sbjct: 1 cttcaactttaacatgggaatgctttctgtctcatcgaagagtaagtgcttccatgtttt 60
Query: 65 agtag 69
|||||
Sbjct: 61 agtag 65
>RF00668;mir-302;AAPN01081641.1/13571-13636 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 37 actttaaaagtaagtgcttccatgttttagt 67
||||| |||||||||||||||||||||||||
Sbjct: 31 acttttaaagtaagtgcttccatgttttagt 61
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 54.0 bits (27), Expect = 2e-07
Identities = 58/69 (84%), Gaps = 7/69 (10%)
Strand = Plus / Plus
Query: 6 cttcaactttaacatggaagtgctttctgtgacttt-------aaaagtaagtgcttcca 58
|||||||||||||||||| ||||||||| ||| || |||||||||||||||||
Sbjct: 1 cttcaactttaacatggaggtgctttctttgatttctgctaaaaaaagtaagtgcttcca 60
Query: 59 tgttttagt 67
|||||||||
Sbjct: 61 tgttttagt 69
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>RF00668;mir-302;AADN02009328.1/24503-24571 9031:Gallus gallus
(chicken)
Length = 69
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttttagt 64
>RF00668;mir-302;ABRO01269686.1/11784-11711 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 74
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagtag 69
|||||||||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgttttagtag 71
>RF00668;mir-302;AAKN02038884.1/104612-104543 10141:Cavia
porcellus (domestic guinea pig)
Length = 70
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagtag 69
|||||||||||||||||||||||||
Sbjct: 43 agtaagtgcttccatgttttagtag 67
>RF00668;mir-302;ABRR01146281.1/7793-7724 30538:Lama pacos
(alpaca)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 52/61 (85%), Gaps = 4/61 (6%)
Strand = Plus / Plus
Query: 11 actttaacatggaagtgctttctgtgacttta----aaagtaagtgcttccatgttttag 66
||||||||||||| | ||| ||||||||||| ||| ||||||||||||||||||||
Sbjct: 6 actttaacatggaggcacttgctgtgactttatagaaaaataagtgcttccatgttttag 65
Query: 67 t 67
|
Sbjct: 66 t 66
>RF00668;mir-302;ABRQ01753171.1/907-976 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagtag 69
|||||||||||||||| |||||||||||
Sbjct: 40 aaaagtaagtgcttccttgttttagtag 67
>RF00668;mir-302;ABRP01199153.1/3701-3634 132908:Pteropus vampyrus
(large flying fox)
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagt 67
|||||||||||||||||||||||
Sbjct: 42 agtaagtgcttccatgttttagt 64
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgtttt 64
|||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgtttt 61
>RF00668;mir-302;AAPY01419152.1/185-114 37347:Tupaia belangeri
(northern tree shrew)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagt 67
|||||||||||||||||||||||
Sbjct: 45 agtaagtgcttccatgttttagt 67
>RF00668;mir-302;AAIY01685397.1/7598-7532 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagta 68
|||||||||||||||| ||||||||||
Sbjct: 37 aaaagtaagtgcttccttgttttagta 63
>RF00668;mir-302;ABRQ01753171.1/1044-1111 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 taaaagtaagtgcttccatgttt 63
|||||||||||||||||||||||
Sbjct: 37 taaaagtaagtgcttccatgttt 59
>RF00668;mir-302;ABQF01043812.1/11235-11302 59729:Taeniopygia
guttata
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagt 67
|||||||||||||||||||||||
Sbjct: 41 agtaagtgcttccatgttttagt 63
>RF00668;mir-302;AAFR03016534.1/30254-30320 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 37 aaaagtaagtgcttccatgttt 58
>RF00668;mir-302;AALT01320989.1/195-127 42254:Sorex araneus
(European shrew)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
|||| |||||||||||||||||||||
Sbjct: 40 aaaaataagtgcttccatgttttagt 65
>RF00668;mir-302;AAPY01684075.1/7919-7851 37347:Tupaia belangeri
(northern tree shrew)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 aaagtaagtgcttccatgtttt 64
||||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgtttt 61
>RF00668;mir-302;AADN02009328.1/24168-24234 9031:Gallus gallus
(chicken)
Length = 67
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttagt 67
||||| ||||||||||||||||||||
Sbjct: 37 aaaagaaagtgcttccatgttttagt 62
>RF00668;mir-302;AADN02009328.1/23865-23929 9031:Gallus gallus
(chicken)
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttt 63
||||||||||||||||||||||
Sbjct: 35 aaaagtaagtgcttccatgttt 56
>RF00668;mir-302;AALT01320989.1/607-537 42254:Sorex araneus
(European shrew)
Length = 71
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 agtaagtgcttccatgttttagtag 69
||||||||||||||||||| |||||
Sbjct: 44 agtaagtgcttccatgtttgagtag 68
>RF00668;mir-302;AANN01821362.1/2160-2092 9365:Erinaceus europaeus
(western European hedgehog)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 taagtgcttccatgttttagt 67
|||||||||||||||||||||
Sbjct: 44 taagtgcttccatgttttagt 64
>RF00668;mir-302;ABRP01133978.1/7459-7391 132908:Pteropus vampyrus
(large flying fox)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 42 aaaagtaagtgcttccatgttttag 66
||||| |||||||||||||||||||
Sbjct: 39 aaaaggaagtgcttccatgttttag 63
>RF00668;mir-302;AABR04095134.1/7301-7233 10116:Rattus norvegicus
(Norway rat)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aaagtaagtgcttccatgttt 63
|||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgttt 60
>RF00668;mir-302;AAKN02038884.1/104365-104297 10141:Cavia
porcellus (domestic guinea pig)
Length = 69
Score = 42.1 bits (21), Expect = 9e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 aaagtaagtgcttccatgttt 63
|||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgttt 60
