miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27833_mml-mir-302c:mirbase
Length = 68
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtaaaacaaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>27117_eca-mir-302c:mirbase
Length = 68
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtaaagcaaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>33312_bta-mir-302c:mirbase
Length = 68
Score = 109 bits (55), Expect = 2e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 5 tgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 5 tgctttaacatgggggtacctgctgtgtaaagcaaaagtaagtgcttccatgtttcagtg 64
Query: 65 gag 67
|||
Sbjct: 65 gag 67
>31984_mmu-mir-302c:mirbase
Length = 68
Score = 97.6 bits (49), Expect = 9e-22
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 5 tgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtg 64
||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 5 tgctttaacatggggttacctgctgtgttaaacaaaagcaagtgcttccatgtttcagtg 64
Query: 65 g 65
|
Sbjct: 65 g 65
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 71.9 bits (36), Expect = 5e-14
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 6 gctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtgg 65
||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||
Sbjct: 1 gctttaacatgggggtacctgctacgtaata-aaaagtaagtgcttccatgtttcagtgg 59
>26019_gga-mir-302c:mirbase
Length = 65
Score = 67.9 bits (34), Expect = 8e-13
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 6 gctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtgg 65
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gctttaacatggaggtacctgctgcct---acaaaagtaagtgcttccatgtttcagtgg 62
>26018_gga-mir-302b:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgttt 59
||||||||||||||||||||||||
Sbjct: 39 acaaaagtaagtgcttccatgttt 62
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||| ||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27115_eca-mir-302a:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||| ||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||| ||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
>33310_bta-mir-302a:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||| ||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
>26020_gga-mir-302d:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttt 60
>28556_hsa-mir-302b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 42 aaaagtaagtgcttccatgttt 63
>30311_ptr-mir-302b:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 42 aaaagtaagtgcttccatgttt 63
>31546_oan-mir-302-1:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgtttcagtg 64
||||||||||||||||||||| ||||
Sbjct: 74 aaagtaagtgcttccatgttttagtg 99
>31547_oan-mir-302-2:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 37 aaaagtaagtgcttccatgttt 58
>27439_mdo-mir-302b:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 10 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 61
>27834_mml-mir-302d:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtg 64
|||||| ||||||||||||||||| ||||
Sbjct: 37 acaaaaataagtgcttccatgtttgagtg 65
>28558_hsa-mir-302d:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtg 64
|||||| ||||||||||||||||| ||||
Sbjct: 37 acaaaaataagtgcttccatgtttgagtg 65
>30313_ptr-mir-302d:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtg 64
|||||| ||||||||||||||||| ||||
Sbjct: 37 acaaaaataagtgcttccatgtttgagtg 65
>30930_ppy-mir-302d:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtg 64
|||||| ||||||||||||||||| ||||
Sbjct: 37 acaaaaataagtgcttccatgtttgagtg 65
>31982_mmu-mir-302a:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgttt 59
|||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgttt 60
>27831_mml-mir-302a:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aagtaagtgcttccatgttt 59
||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgttt 60
>27832_mml-mir-302b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aagtaagtgcttccatgttt 59
||||||||||||||||||||
Sbjct: 47 aagtaagtgcttccatgttt 66
>28555_hsa-mir-302a:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aagtaagtgcttccatgttt 59
||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgttt 60
>30310_ptr-mir-302a:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aagtaagtgcttccatgttt 59
||||||||||||||||||||
Sbjct: 41 aagtaagtgcttccatgttt 60
>30928_ppy-mir-302b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40 aagtaagtgcttccatgttt 59
||||||||||||||||||||
Sbjct: 47 aagtaagtgcttccatgttt 66
>26017_gga-mir-302a:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
||||| |||||||||||||||| ||||
Sbjct: 37 aaaagaaagtgcttccatgttttagtg 63
>26791_cfa-mir-302b:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41 agtaagtgcttccatgttt 59
|||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgttt 65
>26793_cfa-mir-302d:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||| ||||||||||||||||| ||||
Sbjct: 39 aaaaataagtgcttccatgttttagtg 65
>27116_eca-mir-302b:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41 agtaagtgcttccatgttt 59
|||||||||||||||||||
Sbjct: 48 agtaagtgcttccatgttt 66
>27118_eca-mir-302d:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||| ||||||||||||||||| ||||
Sbjct: 39 aaaaataagtgcttccatgttttagtg 65
>31983_mmu-mir-302b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41 agtaagtgcttccatgttt 59
|||||||||||||||||||
Sbjct: 46 agtaagtgcttccatgttt 64
>31985_mmu-mir-302d:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||| ||||||||||||||||| ||||
Sbjct: 37 aaaaataagtgcttccatgtttgagtg 63
>33311_bta-mir-302b:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41 agtaagtgcttccatgttt 59
|||||||||||||||||||
Sbjct: 47 agtaagtgcttccatgttt 65
>33313_bta-mir-302d:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||| ||||||||||||||||| ||||
Sbjct: 41 aaaaataagtgcttccatgttttagtg 67
