miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00668;mir-302;ABRQ01753171.1/1044-1111 9813:Procavia capensis
(cape rock hyrax)
Length = 68
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 cctttgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttc 60
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1 cctttgctttaacatgggggtacctgctgtgtaaaataaaagtaagtgcttccatgtttc 60
Query: 61 agtggag 67
|||||||
Sbjct: 61 agtggag 67
>RF00668;mir-302;AAFR03016534.1/30254-30320 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 77.8 bits (39), Expect = 1e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 5 tgctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||||| || | | |||||||||||||||||||||||||||
Sbjct: 5 tgctttaacatgggggtacctgctacgtaata-aaaagtaagtgcttccatgtttcagtg 63
Query: 65 gag 67
|||
Sbjct: 64 gag 66
>RF00668;mir-302;AADN02009328.1/23865-23929 9031:Gallus gallus
(chicken)
Length = 65
Score = 67.9 bits (34), Expect = 1e-11
Identities = 54/60 (90%), Gaps = 3/60 (5%)
Strand = Plus / Plus
Query: 6 gctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgtttcagtgg 65
|||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 6 gctttaacatggaggtacctgctgcct---acaaaagtaagtgcttccatgtttcagtgg 62
>RF00668;mir-302;ABRP01199153.1/3997-3932 132908:Pteropus vampyrus
(large flying fox)
Length = 66
Score = 54.0 bits (27), Expect = 2e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtgga 66
|||||||||||||| ||||||||||||||||
Sbjct: 34 acaaaagtaagtgcctccatgtttcagtgga 64
>RF00668;mir-302;AADN02009328.1/23605-23673 9031:Gallus gallus
(chicken)
Length = 69
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgttt 59
||||||||||||||||||||||||
Sbjct: 37 acaaaagtaagtgcttccatgttt 60
>RF00668;mir-302;ABRQ01753171.1/1212-1280 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgtttcagtg 64
|||||||||||||||||||||| ||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>RF00668;mir-302;AAPN01081641.1/13571-13636 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgtttcagtg 64
||||||||||||||||||||| ||||
Sbjct: 37 aaagtaagtgcttccatgttttagtg 62
>RF00668;mir-302;ABRR01131093.1/749-681 30538:Lama pacos (alpaca)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttt 60
>RF00668;mir-302;AAPY01419152.1/185-114 37347:Tupaia belangeri
(northern tree shrew)
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 41 agtaagtgcttccatgtttcagtgga 66
||||||||||||||||||| ||||||
Sbjct: 45 agtaagtgcttccatgttttagtgga 70
>RF00668;mir-302;AAKN02038884.1/104365-104297 10141:Cavia
porcellus (domestic guinea pig)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgtttc 60
||||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgtttc 61
>RF00668;mir-302;AAYZ01300380.1/1601-1528 9978:Ochotona princeps
(American pika)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 44 aaaagtaagtgcttccatgttt 65
>RF00668;mir-302;AAGW01417911.1/808-881 9986:Oryctolagus cuniculus
(rabbit)
Length = 74
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 44 aaaagtaagtgcttccatgttt 65
>RF00668;mir-302;ABQF01043812.1/11235-11302 59729:Taeniopygia
guttata
Length = 68
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 36 acaaaagtaagtgcttccatgtttcagtgg 65
|||| ||||||||||||||||||| |||||
Sbjct: 36 acaacagtaagtgcttccatgttttagtgg 65
>RF00668;mir-302;AADN02009328.1/24503-24571 9031:Gallus gallus
(chicken)
Length = 69
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 38 aaaagtaagtgcttccatgttt 59
||||||||||||||||||||||
Sbjct: 39 aaaagtaagtgcttccatgttt 60
>RF00668;mir-302;AAFR03016534.1/30106-30172 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 67
Score = 42.1 bits (21), Expect = 8e-04
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 7 ctttaacatgggggtacctgctgtgtgaaacaaaagtaagtgcttccatgttt 59
||||||||||| ||||| | |||||| || ||| ||||||||||||||||||
Sbjct: 7 ctttaacatggaggtactttctgtgtttaa-aaaggtaagtgcttccatgttt 58
>RF00668;mir-302;AAPY01684075.1/7919-7851 37347:Tupaia belangeri
(northern tree shrew)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgttt 59
|||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgttt 60
>RF00668;mir-302;AABR04095134.1/7301-7233 10116:Rattus norvegicus
(Norway rat)
Length = 69
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 39 aaagtaagtgcttccatgttt 59
|||||||||||||||||||||
Sbjct: 40 aaagtaagtgcttccatgttt 60
