miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28558_hsa-mir-302d:mirbase
Length = 68
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
Query: 61 gagtgtg 67
|||||||
Sbjct: 61 gagtgtg 67
>30930_ppy-mir-302d:mirbase
Length = 68
Score = 125 bits (63), Expect = 4e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggatgcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
Query: 61 gagtgtg 67
|||||||
Sbjct: 61 gagtgtg 67
>26793_cfa-mir-302d:mirbase
Length = 70
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacatgataaaaataagtgcttccatgttt 60
Query: 61 gagtgtg 67
||||||
Sbjct: 61 tagtgtg 67
>27834_mml-mir-302d:mirbase
Length = 68
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtggtatgacaaaaataagtgcttccatgttt 60
Query: 61 gagtgtg 67
|||||||
Sbjct: 61 gagtgtg 67
>27118_eca-mir-302d:mirbase
Length = 68
Score = 109 bits (55), Expect = 2e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacttgagaaaaataagtgcttccatgttt 60
Query: 61 gagtgtg 67
||||||
Sbjct: 61 tagtgtg 67
>33313_bta-mir-302d:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 2e-16
Identities = 61/67 (91%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacat--gacaaaaataagtgcttccatgt 58
||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct: 1 cctctactttaacatggaggcacttgctgtgacttcataaaaaaataagtgcttccatgt 60
Query: 59 ttgagtg 65
|| ||||
Sbjct: 61 tttagtg 67
>31985_mmu-mir-302d:mirbase
Length = 66
Score = 77.8 bits (39), Expect = 8e-16
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 5 tactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgtttgagt 64
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 5 tactttaacatggaggcacttgctgtg-cattt-aaaaataagtgcttccatgtttgagt 62
Query: 65 gtg 67
|||
Sbjct: 63 gtg 65
>26018_gga-mir-302b:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 3e-09
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 5 tactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
|||||||||||||||| ||| |||||| | |||||| |||||||||||||||||
Sbjct: 7 tactttaacatggaggtgctttctgtgattttacaaaagtaagtgcttccatgttt 62
>27441_mdo-mir-302d:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 3e-09
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||| |||||||||||| | |||||||||| | | |||| |||||||||||||||||
Sbjct: 1 cctctgctttaacatggaagtgcttgctgtgattttaaaaaattaagtgcttccatgttt 60
Query: 61 gagt 64
||||
Sbjct: 61 gagt 64
>26020_gga-mir-302d:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 55/62 (88%), Gaps = 4/62 (6%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgaca--tgacaaaaataagtgcttccatgt 58
|||| ||||||||||||||| |||||||| |||| ||| |||| |||||||||||||||
Sbjct: 1 cctcaactttaacatggaggtacttgctg-gacacctga-aaaagtaagtgcttccatgt 58
Query: 59 tt 60
||
Sbjct: 59 tt 60
>26019_gga-mir-302c:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 33 acaaaagtaagtgcttccatgtttcagtg 61
>26792_cfa-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 36 acaaaagtaagtgcttccatgtttcagtg 64
>27439_mdo-mir-302b:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 3 tctactttaacatggaggcacttgctgtg 31
|||||||||||||||||| |||| |||||
Sbjct: 6 tctactttaacatggaggtactttctgtg 34
>27833_mml-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 36 acaaaagtaagtgcttccatgtttcagtg 64
>28557_hsa-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 36 acaaaagtaagtgcttccatgtttcagtg 64
>30312_ptr-mir-302c:mirbase
Length = 67
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 36 acaaaagtaagtgcttccatgtttcagtg 64
>30929_ppy-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 37 acaaaaataagtgcttccatgtttgagtg 65
|||||| ||||||||||||||||| ||||
Sbjct: 36 acaaaagtaagtgcttccatgtttcagtg 64
>33312_bta-mir-302c:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 55/65 (84%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 1 cctctactttaacatggaggcacttgctgtgacatgacaaaaataagtgcttccatgttt 60
||||| ||||||||||| || || ||||||| | | ||||| |||||||||||||||||
Sbjct: 1 cctctgctttaacatgggggtacctgctgtgtaaag-caaaagtaagtgcttccatgttt 59
Query: 61 gagtg 65
||||
Sbjct: 60 cagtg 64
>27117_eca-mir-302c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 38 caaaaataagtgcttccatgtttgagtg 65
||||| ||||||||||||||||| ||||
Sbjct: 37 caaaagtaagtgcttccatgtttcagtg 64
>26790_cfa-mir-302a:mirbase
Length = 69
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgtttgagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27115_eca-mir-302a:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgtttgagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 39 aaaagtaagtgcttccatgttttagtg 65
>27438_mdo-mir-302a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgtttgagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
>27440_mdo-mir-302c:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgtttgagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 32 aaaagtaagtgcttccatgtttcagtg 58
>33310_bta-mir-302a:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 39 aaaaataagtgcttccatgtttgagtg 65
|||| ||||||||||||||||| ||||
Sbjct: 40 aaaagtaagtgcttccatgttttagtg 66
