miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28563_hsa-mir-320b-2:mirbase
Length = 138
Score = 218 bits (110), Expect = 8e-58
Identities = 128/137 (93%)
Strand = Plus / Plus
Query: 1 tgttattttttgtcttctacctaagaattctgtctcttaggctttctcttcccagatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgttattttttgtcttctacctaagaattctgtctcttaggctttctcttcccagatttc 60
Query: 61 ccaaagttgggaaaagctgggttgagagggcaaaaggnnnnnnnnngaattctgtctctg 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 ccaaagttgggaaaagctgggttgagagggcaaaaggaaaaaaaaagaattctgtctctg 120
Query: 121 acataattagataggga 137
|||||||||||||||||
Sbjct: 121 acataattagataggga 137
>30934_ppy-mir-320b-2:mirbase
Length = 138
Score = 186 bits (94), Expect = 3e-48
Identities = 124/137 (90%)
Strand = Plus / Plus
Query: 1 tgttattttttgtcttctacctaagaattctgtctcttaggctttctcttcccagatttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 1 tgttattttttgtcttctacctaagaattctgtctcttaggctttctcttctcagttttc 60
Query: 61 ccaaagttgggaaaagctgggttgagagggcaaaaggnnnnnnnnngaattctgtctctg 120
||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 ccaaagttgagaaaagctgggttgagagggcaaaaggaaaaaaaaagaattctgtctctg 120
Query: 121 acataattagataggga 137
||| |||||||||||||
Sbjct: 121 acacaattagataggga 137
>30937_ppy-mir-320d-1:mirbase
Length = 48
Score = 61.9 bits (31), Expect = 1e-10
Identities = 44/47 (93%), Gaps = 1/47 (2%)
Strand = Plus / Plus
Query: 44 ttctcttcccagat-ttcccaaagttgggaaaagctgggttgagagg 89
|||||||||||| | |||||||||||| |||||||||||||||||||
Sbjct: 1 ttctcttcccagttcttcccaaagttgagaaaagctgggttgagagg 47
>28566_hsa-mir-320d-1:mirbase
Length = 48
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 58 ttcccaaagttgggaaaagctgggttgagagg 89
|||||||||||| |||||||||||||||||||
Sbjct: 16 ttcccaaagttgagaaaagctgggttgagagg 47
>30321_ptr-mir-320d-1:mirbase
Length = 47
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 58 ttcccaaagttgggaaaagctgggttgagagg 89
|||||||||||| |||||||||||||||||||
Sbjct: 16 ttcccaaagttgagaaaagctgggttgagagg 47
>28562_hsa-mir-320b-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagggcaaa 94
|||||||||||||||||||||||||
Sbjct: 37 ggaaaagctgggttgagagggcaaa 61
>28564_hsa-mir-320c-1:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 39 aggctttctcttcccagat-ttcccaaagttgggaaaagctgggttgagaggg 90
|||| |||||||||||| | |||||| ||| |||||||||||||||||||||
Sbjct: 16 aggccttctcttcccagttcttcccagagtcaggaaaagctgggttgagaggg 68
>28565_hsa-mir-320c-2:mirbase
Length = 50
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 ttcccaaagttgggaaaagctgggttgagaggg 90
|||||| | ||||||||||||||||||||||||
Sbjct: 17 ttcccagaattgggaaaagctgggttgagaggg 49
>30317_ptr-mir-320b-1:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagggcaaa 94
|||||||||||||||||||||||||
Sbjct: 37 ggaaaagctgggttgagagggcaaa 61
>30319_ptr-mir-320c-1:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 47/53 (88%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 39 aggctttctcttcccagat-ttcccaaagttgggaaaagctgggttgagaggg 90
|||| |||||||||||| | |||||| ||| |||||||||||||||||||||
Sbjct: 15 aggccttctcttcccagttcttcccagagtcaggaaaagctgggttgagaggg 67
>30320_ptr-mir-320c-2:mirbase
Length = 49
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 58 ttcccaaagttgggaaaagctgggttgagaggg 90
|||||| | ||||||||||||||||||||||||
Sbjct: 16 ttcccagaattgggaaaagctgggttgagaggg 48
>30933_ppy-mir-320b-1:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagggcaaa 94
|||||||||||||||||||||||||
Sbjct: 37 ggaaaagctgggttgagagggcaaa 61
>30936_ppy-mir-320c-2:mirbase
Length = 50
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 ttgggaaaagctgggttgagaggg 90
||||||||||||||||||||||||
Sbjct: 26 ttgggaaaagctgggttgagaggg 49
>26794_cfa-mir-320:mirbase
Length = 54
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 30 gggaaaagctgggttgagagggc 52
>27835_mml-mir-320:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>28561_hsa-mir-320a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>30316_ptr-mir-320a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>30932_ppy-mir-320a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>31986_mmu-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>32839_rno-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>33314_bta-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 45 gggaaaagctgggttgagagggc 67
>33315_bta-mir-320-1:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 53 gggaaaagctgggttgagagggc 75
>34052_ssc-mir-320:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 69 gggaaaagctgggttgagagggc 91
|||||||||||||||||||||||
Sbjct: 40 gggaaaagctgggttgagagggc 62
>30935_ppy-mir-320c-1:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagaggg 90
|||||||||||||||||||||
Sbjct: 48 ggaaaagctgggttgagaggg 68
>25846_xtr-mir-320:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagg 89
||||||||||||||||||||
Sbjct: 69 ggaaaagctgggttgagagg 88
>28567_hsa-mir-320d-2:mirbase
Length = 48
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagg 89
||||||||||||||||||||
Sbjct: 28 ggaaaagctgggttgagagg 47
>30323_ptr-mir-320d-3:mirbase
Length = 47
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagg 89
||||||||||||||||||||
Sbjct: 28 ggaaaagctgggttgagagg 47
>30322_ptr-mir-320d-2:mirbase
Length = 47
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagg 89
||||||||||||||||||||
Sbjct: 27 ggaaaagctgggttgagagg 46
>30938_ppy-mir-320d-2:mirbase
Length = 48
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 ggaaaagctgggttgagagg 89
||||||||||||||||||||
Sbjct: 28 ggaaaagctgggttgagagg 47
