miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28566_hsa-mir-320d-1:mirbase
Length = 48
Score = 93.7 bits (47), Expect = 9e-21
Identities = 47/47 (100%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
>30937_ppy-mir-320d-1:mirbase
Length = 48
Score = 85.7 bits (43), Expect = 2e-18
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttctcttcccagttcttcccaaagttgagaaaagctgggttgagagg 47
>30934_ppy-mir-320b-2:mirbase
Length = 138
Score = 63.9 bits (32), Expect = 8e-12
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 16 ttcccaaagttgagaaaagctgggttgagagg 47
||||||||||||||||||||||||||||||||
Sbjct: 58 ttcccaaagttgagaaaagctgggttgagagg 89
>28563_hsa-mir-320b-2:mirbase
Length = 138
Score = 56.0 bits (28), Expect = 2e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 ttcccaaagttgagaaaagctgggttgagagg 47
|||||||||||| |||||||||||||||||||
Sbjct: 58 ttcccaaagttgggaaaagctgggttgagagg 89
>30318_ptr-mir-320b-2:mirbase
Length = 137
Score = 56.0 bits (28), Expect = 2e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 ttcccaaagttgagaaaagctgggttgagagg 47
|||||||||||| |||||||||||||||||||
Sbjct: 58 ttcccaaagttgggaaaagctgggttgagagg 89
>28564_hsa-mir-320c-1:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 8e-09
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 21 ttctcttcccagttcttcccagagtcaggaaaagctgggttgagagg 67
>28565_hsa-mir-320c-2:mirbase
Length = 50
Score = 54.0 bits (27), Expect = 8e-09
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 9 ccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||||||||||| | ||| |||||||||||||||||||
Sbjct: 10 ccagttcttcccagaattgggaaaagctgggttgagagg 48
>30319_ptr-mir-320c-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 8e-09
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct: 20 ttctcttcccagttcttcccagagtcaggaaaagctgggttgagagg 66
>30320_ptr-mir-320c-2:mirbase
Length = 49
Score = 54.0 bits (27), Expect = 8e-09
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 9 ccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||||||||||| | ||| |||||||||||||||||||
Sbjct: 9 ccagttcttcccagaattgggaaaagctgggttgagagg 47
>26794_cfa-mir-320:mirbase
Length = 54
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 4 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 50
>27835_mml-mir-320:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>28561_hsa-mir-320a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>30316_ptr-mir-320a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>30932_ppy-mir-320a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>30935_ppy-mir-320c-1:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| ||||| ||||||||| ||| |||||||||||||||||||
Sbjct: 21 ttctcttcccacttcttcccagagtcaggaaaagctgggttgagagg 67
>30936_ppy-mir-320c-2:mirbase
Length = 50
Score = 46.1 bits (23), Expect = 2e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 9 ccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||||||| ||| | ||| |||||||||||||||||||
Sbjct: 10 ccagttctttccagaattgggaaaagctgggttgagagg 48
>31986_mmu-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>32839_rno-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>33314_bta-mir-320:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 19 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 65
>33315_bta-mir-320-1:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 27 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 73
>34052_ssc-mir-320:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 2e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1 ttctcgtcccagttcttcccaaagttgagaaaagctgggttgagagg 47
||||| |||| ||||||||| ||| | |||||||||||||||||||
Sbjct: 14 ttctcttcccggttcttcccggagtcgggaaaagctgggttgagagg 60
>30322_ptr-mir-320d-2:mirbase
Length = 47
Score = 40.1 bits (20), Expect = 1e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 12 gttcttcccaaagttgagaaaagctgggttgagagg 47
||||||||| |||| |||||||||||||||||||
Sbjct: 11 gttcttcccgaagtcaggaaaagctgggttgagagg 46
>25846_xtr-mir-320:mirbase
Length = 120
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 70 gaaaagctgggttgagagg 88
>28562_hsa-mir-320b-1:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 38 gaaaagctgggttgagagg 56
>28567_hsa-mir-320d-2:mirbase
Length = 48
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 29 gaaaagctgggttgagagg 47
>30317_ptr-mir-320b-1:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 38 gaaaagctgggttgagagg 56
>30323_ptr-mir-320d-3:mirbase
Length = 47
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 29 gaaaagctgggttgagagg 47
>30933_ppy-mir-320b-1:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 38 gaaaagctgggttgagagg 56
>30938_ppy-mir-320d-2:mirbase
Length = 48
Score = 38.2 bits (19), Expect = 4e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29 gaaaagctgggttgagagg 47
|||||||||||||||||||
Sbjct: 29 gaaaagctgggttgagagg 47
