miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00719;mir-326;ABRQ01358747.1/5963-6057 9813:Procavia capensis
(cape rock hyrax)
Length = 95
Score = 163 bits (82), Expect = 5e-40
Identities = 91/94 (96%)
Strand = Plus / Plus
Query: 1 ctcatctgtctgttgggctggaggcagggcctttgtgaaggcgggtggtgctcagatcgc 60
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 ctcatctgtctgttgggttggaggcagggcctttgtgaaggcgagtggtgctcagatcgc 60
Query: 61 ctctgggcccttcctccagccccgaggcggattc 94
|||||||||||||||||||||| |||||||||||
Sbjct: 61 ctctgggcccttcctccagcccagaggcggattc 94
>RF00719;mir-326;AABR04004480.1/41205-41111 10116:Rattus
norvegicus (Norway rat)
Length = 95
Score = 137 bits (69), Expect = 3e-32
Identities = 87/93 (93%)
Strand = Plus / Plus
Query: 1 ctcatctgtctgttgggctggaggcagggcctttgtgaaggcgggtggtgctcagatcgc 60
||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 1 ctcatctgtctgtggggctgggggcagggcctttgtgaaggcgggttatgctcagatcgc 60
Query: 61 ctctgggcccttcctccagccccgaggcggatt 93
||||||||||||||||||| |||||||| ||||
Sbjct: 61 ctctgggcccttcctccagtcccgaggcagatt 93
>RF00719;mir-326;AAYZ01294195.1/2778-2684 9978:Ochotona princeps
(American pika)
Length = 95
Score = 133 bits (67), Expect = 4e-31
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 8 gtctgttgggctggaggcagggcctttgtgaaggcgggtggtgctcagatcgcctctggg 67
|||||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 8 gtctgttgggctgggggcagggcctttgtgaaggcgggttgtgctcggatcgcctctggg 67
Query: 68 cccttcctccagccccgag 86
|||||||||||||||||||
Sbjct: 68 cccttcctccagccccgag 86
>RF00719;mir-326;ABRO01063577.1/17823-17916 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 94
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 5 tctgtctgttgggctggaggcagggcctttgtgaaggcgggtggtgctcagatcgcctct 64
|||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||||||||
Sbjct: 5 tctgtctgatgggctgggggcagggcctttgtgcaggcgggttgtgctc-gatcgcctct 63
Query: 65 gggcccttcctccagccccgaggcgga 91
||||||||||||||||||| |||||||
Sbjct: 64 gggcccttcctccagcccccaggcgga 90
>RF00719;mir-326;ABRP01153021.1/9171-9264 132908:Pteropus vampyrus
(large flying fox)
Length = 94
Score = 89.7 bits (45), Expect = 6e-18
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 8 gtctgttgggctggaggcagggcctttgtgaaggcgggtggtgctcagatcgcctctggg 67
||||||||||||||||||||||||||||||||||||||| || | |||| |||||||||
Sbjct: 8 gtctgttgggctggaggcagggcctttgtgaaggcgggttgtacccaga-cgcctctgga 66
Query: 68 cccttcctccagccccgaggc 88
||||| |||||||| |||||
Sbjct: 67 tccttcttccagcccagaggc 87
>RF00719;mir-326;AALT01158994.1/1864-1772 42254:Sorex araneus
(European shrew)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 gcctctgggcccttcctccagc 80
||||||||||||||||||||||
Sbjct: 57 gcctctgggcccttcctccagc 78
