miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/1167-1246 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 141 bits (71), Expect = 1e-33
Identities = 77/79 (97%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gtacccgaagagaggttttctgggtttctgtttctttattgatgatgaaacacacctggt 61
Query: 61 taacctcttttccagtatc 79
|||||||||||||||||||
Sbjct: 62 taacctcttttccagtatc 80
>RF00641;mir-154;AAEX02019639.1/134880-134959 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 2 gtacctgaagagaggttttctgggtttctgtttctttcatgaggatgaaacacacccagt 61
Query: 61 taacctcttttccag 75
|||||||||||||||
Sbjct: 62 taacctcttttccag 76
>RF00641;mir-154;AAWR02020065.1/17831-17910 9796:Equus caballus
(horse)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
||||||||||||||||||||| ||| |||||||||||| ||||| |||||| |||||||
Sbjct: 2 gtacctgaagagaggttttctaggtctctgtttctttagtgagggtgaaacgaacctggt 61
Query: 61 taacctcttttccagtatc 79
|||||||||||||||||||
Sbjct: 62 taacctcttttccagtatc 80
>RF00641;mir-154;AAQR01664929.1/14898-14977 30611:Otolemur
garnettii (small-eared galago)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
|||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||
Sbjct: 2 gtacctgaagagagagtttctgggtttttgtttctttaatgaggatcaaacacacctgga 61
Query: 61 taacctcttttccagtatc 79
|||||||||||||||||||
Sbjct: 62 taacctcttttccagtatc 80
>RF00641;mir-154;AAGW01360474.1/8073-8152 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 109 bits (55), Expect = 5e-24
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 gtacctgaagagaggttttctgggtttctgtttcttggatgaggatgaaacacacctggc 61
Query: 61 taacctcttttccagtatc 79
| ||||||||| |||||||
Sbjct: 62 tcacctctttttcagtatc 80
>RF00641;mir-154;ABRN01448850.1/5111-5190 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 80
Score = 101 bits (51), Expect = 1e-21
Identities = 72/79 (91%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
|||||||| || ||||||||| ||| ||||||||||| |||||||||||||||||||||
Sbjct: 2 gtacctgaggacaggttttctaggtctctgtttctttcatgaggatgaaacacacctggt 61
Query: 61 taacctcttttccagtatc 79
|||||| ||||||||||||
Sbjct: 62 taaccttttttccagtatc 80
>RF00641;mir-154;AAQQ01350201.1/367-446 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 80
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
|||||||||||||||||||||||| || ||||||| | |||||||||||||| || |||
Sbjct: 2 gtacctgaagagaggttttctgggcttgtgtttctgtgatgaggatgaaacacccccggt 61
Query: 61 taacctcttttccagtatc 79
|||||||||| ||||||||
Sbjct: 62 taacctctttcccagtatc 80
>RF00641;mir-154;AANN01422717.1/1753-1834 9365:Erinaceus europaeus
(western European hedgehog)
Length = 82
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/74 (89%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 4 cctgaagagaggttttctgggtttctgtttcttt--attgaggatgaaacacacctggtt 61
||||||||||||||||||||| |||||||||||| | || ||||||||||||||| |
Sbjct: 5 cctgaagagaggttttctgggcttctgtttcttttaagtgcacatgaaacacacctggct 64
Query: 62 aacctcttttccag 75
||||||||||||||
Sbjct: 65 aacctcttttccag 78
>RF00641;mir-154;AAHY01103470.1/69341-69262 10090:Mus musculus
(house mouse)
Length = 80
Score = 77.8 bits (39), Expect = 2e-14
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||| |
Sbjct: 2 gtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacacccagc 61
Query: 61 taacctcttttccagtatc 79
|||||| |||| |||||||
Sbjct: 62 taacctttttttcagtatc 80
>RF00641;mir-154;ABRP01151523.1/5151-5228 132908:Pteropus vampyrus
(large flying fox)
Length = 78
Score = 71.9 bits (36), Expect = 1e-12
Identities = 69/79 (87%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
||||||| || |||||||||| ||| | ||||||||| ||||| ||||||||||||||
Sbjct: 2 gtacctggagggaggttttctaggtgt--gtttctttaacgaggacgaaacacacctggt 59
Query: 61 taacctcttttccagtatc 79
||||| |||||||||||||
Sbjct: 60 taaccccttttccagtatc 78
>RF00641;mir-154;AAQQ01350201.1/653-739 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 3 acctgaagagaggttttctgggtttctgtttcttt 37
||||| |||||||| ||||||||||||||||||||
Sbjct: 4 acctggagagaggtcttctgggtttctgtttcttt 38
