miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28584_hsa-mir-335:mirbase
Length = 94
Score = 184 bits (93), Expect = 7e-48
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 gttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcatta 61
Query: 61 ttgctcctgacctcctctcatttgctatattca 93
|||||||||||||||||||||||||||||||||
Sbjct: 62 ttgctcctgacctcctctcatttgctatattca 94
>30952_ppy-mir-335:mirbase
Length = 92
Score = 182 bits (92), Expect = 3e-47
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
Query: 62 tgctcctgacctcctctcatttgctatattca 93
||||||||||||||||||||||||||||||||
Sbjct: 61 tgctcctgacctcctctcatttgctatattca 92
>27847_mml-mir-335:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 6 gagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgct 60
Query: 66 cctgacctcctctcatttgctatattca 93
||||||||||||||||||||||||||||
Sbjct: 61 cctgacctcctctcatttgctatattca 88
>33325_bta-mir-335:mirbase
Length = 92
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 60
Query: 62 tgctcctgacctcctctcatttgct 86
|||||||||||||||||||||||||
Sbjct: 61 tgctcctgacctcctctcatttgct 85
>27128_eca-mir-335:mirbase
Length = 75
Score = 149 bits (75), Expect = 4e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 6 gagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgct 60
Query: 66 cctgacctcctctca 80
|||||||||||||||
Sbjct: 61 cctgacctcctctca 75
>34060_ssc-mir-335:mirbase
Length = 80
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattat 61
Query: 62 tgctcctgacctcctctca 80
|||||||||||||||||||
Sbjct: 62 tgctcctgacctcctctca 80
>32853_rno-mir-335:mirbase
Length = 98
Score = 125 bits (63), Expect = 6e-30
Identities = 85/92 (92%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttgt----cataaaccgtttttca 57
||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 58 ttattgctcctgacctcctctcatttgctata 89
||||||||||||||||||||||||||| ||||
Sbjct: 63 ttattgctcctgacctcctctcatttgttata 94
>26804_cfa-mir-335:mirbase
Length = 58
Score = 115 bits (58), Expect = 6e-27
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 15 tcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcctgacc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcaagagcaataacgaaaaatgtttgtcataaaccgtttttcattattgctcctgacc 58
>32000_mmu-mir-335:mirbase
Length = 98
Score = 109 bits (55), Expect = 4e-25
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 57
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 58 ttattgctcctgacctcctctcat 81
||||||||||||||| ||||||||
Sbjct: 63 ttattgctcctgaccccctctcat 86
>32001_mmu-mir-335:mirbase
Length = 98
Score = 109 bits (55), Expect = 4e-25
Identities = 77/84 (91%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 2 ttttgagcgggggtcaagagcaataacgaaaaatgtttg----tcataaaccgtttttca 57
||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 3 ttttgggcgggggtcaagagcaataacgaaaaatgtttgtttttcgtaaaccgtttttca 62
Query: 58 ttattgctcctgacctcctctcat 81
||||||||||||||| ||||||||
Sbjct: 63 ttattgctcctgaccccctctcat 86
