miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>28587_hsa-mir-338:mirbase
Length = 67
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>28588_hsa-mir-338:mirbase
Length = 67
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>29228_hsa-mir-3065:mirbase
Length = 79
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 14
Query: 61 ttgaag 66
||||||
Sbjct: 13 ttgaag 8
>29229_hsa-mir-3065:mirbase
Length = 79
Score = 131 bits (66), Expect = 6e-32
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 14
Query: 61 ttgaag 66
||||||
Sbjct: 13 ttgaag 8
>27850_mml-mir-338:mirbase
Length = 67
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>27851_mml-mir-338:mirbase
Length = 67
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggtgactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>30955_ppy-mir-338:mirbase
Length = 67
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>30956_ppy-mir-338:mirbase
Length = 67
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 1 tctccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 tctccaacaatatcctggtgctgagtgatgactcaggcaactccagcatcagtgattttg 60
Query: 61 ttgaag 66
||||||
Sbjct: 61 ttgaag 66
>33326_bta-mir-338:mirbase
Length = 92
Score = 101 bits (51), Expect = 6e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 17 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 76
Query: 64 aag 66
|||
Sbjct: 77 aag 79
>34061_ssc-mir-338:mirbase
Length = 79
Score = 101 bits (51), Expect = 6e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 10 ccaacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 69
Query: 64 aag 66
|||
Sbjct: 70 aag 72
>26805_cfa-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 6 aacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttga 64
||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 1 aacaatatcctggtgctgagtgatgacacatgcaactccagcatcagtgattttgttga 59
>27131_eca-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>27132_eca-mir-338:mirbase
Length = 59
Score = 93.7 bits (47), Expect = 1e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 5 caacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct: 1 caacaatatcctggtgctgagtgatgacacacgcaactccagcatcagtgattttgttg 59
>32004_mmu-mir-338:mirbase
Length = 98
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
Query: 64 aag 66
|||
Sbjct: 83 aag 85
>32005_mmu-mir-338:mirbase
Length = 98
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 24 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 82
Query: 64 aag 66
|||
Sbjct: 83 aag 85
>32498_mmu-mir-3065:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 73 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 15
Query: 64 aag 66
|||
Sbjct: 14 aag 12
>32856_rno-mir-338:mirbase
Length = 66
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 4 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 62
Query: 64 aag 66
|||
Sbjct: 63 aag 65
>33022_rno-mir-3065:mirbase
Length = 103
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 80 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 22
Query: 64 aag 66
|||
Sbjct: 21 aag 19
>33023_rno-mir-3065:mirbase
Length = 103
Score = 61.9 bits (31), Expect = 5e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 4 ccaacaatatcctggtgctgagtgatgactcaggcgactccagcatcagtgattttgttg 63
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct: 80 ccaacaatatcctggtgctgagtgggtgcacagt-gactccagcatcagtgattttgttg 22
Query: 64 aag 66
|||
Sbjct: 21 aag 19
>27442_mdo-mir-338:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 8e-10
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 4 ccaacaatatcctggtgctgagtgat-gactca-ggcgactccagcatcagtgattttgt 61
|||||||||||||| |||||||||| | | || || |||||||||||||||||||||||
Sbjct: 12 ccaacaatatcctgatgctgagtgagcggcacatggagactccagcatcagtgattttgt 71
Query: 62 tgaag 66
|||||
Sbjct: 72 tgaag 76
>34389_dre-mir-338-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34390_dre-mir-338-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34391_dre-mir-338-3:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34392_dre-mir-338-4:mirbase
Length = 124
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 69 actccagcatcagtgattttgttg 92
>34649_fru-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>34797_tni-mir-338:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 7e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 40 actccagcatcagtgattttgttg 63
||||||||||||||||||||||||
Sbjct: 50 actccagcatcagtgattttgttg 73
>25847_xtr-mir-338-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 47 ctccagcatcagtgattttgttg 69
>25848_xtr-mir-338-2:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 38 ctccagcatcagtgattttgttg 60
>26523_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
>26524_tgu-mir-338:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41 ctccagcatcagtgattttgttg 63
|||||||||||||||||||||||
Sbjct: 40 ctccagcatcagtgattttgttg 62
