miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00763;mir-339;AANU01169837.1/4759-4854 9544:Macaca mulatta
(rhesus monkey)
Length = 96
Score = 168 bits (85), Expect = 8e-42
Identities = 91/93 (97%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 61
Query: 61 acgacagagccagcgcctgccccagtgtctgcg 93
||||||||||| ||||| |||||||||||||||
Sbjct: 62 acgacagagccggcgcccgccccagtgtctgcg 94
>RF00763;mir-339;AAPY01369443.1/857-762 37347:Tupaia belangeri
(northern tree shrew)
Length = 96
Score = 117 bits (59), Expect = 3e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 2 cggggtggccactctccctgtcctccaggagctcacgtgcgcctgcctgtgagcgcctcg 61
Query: 61 acgacagagcc 71
|||||||||||
Sbjct: 62 acgacagagcc 72
>RF00763;mir-339;AAGW01342133.1/1560-1466 9986:Oryctolagus
cuniculus (rabbit)
Length = 95
Score = 111 bits (56), Expect = 2e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 4 ggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacg 63
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 ggcggccgccctccctgtcctccaggagctcacgtcggcctgcctgtgagcgcctcgacg 63
Query: 64 acagagcc 71
||||||||
Sbjct: 64 acagagcc 71
>RF00763;mir-339;ABRO01112159.1/16392-16297 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 96
Score = 107 bits (54), Expect = 2e-23
Identities = 66/70 (94%)
Strand = Plus / Plus
Query: 2 ggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcga 61
||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 3 ggggcggccaccctccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcga 62
Query: 62 cgacagagcc 71
|||||||||
Sbjct: 63 tgacagagcc 72
>RF00763;mir-339;AAYZ01411525.1/5602-5507 9978:Ochotona princeps
(American pika)
Length = 96
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 6 cggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgac 65
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 cggccgccctccctgtcctccaggagctcacgtcagcctgcctgtgagcgcctcgacgac 66
Query: 66 agagcc 71
||||||
Sbjct: 67 agagcc 72
>RF00763;mir-339;AC161058.2/17435-17530 10090:Mus musculus (house
mouse)
Length = 96
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2 cggggtggccactatccctgtcctccaggagctcacgtatgcctgcctgtgagcgcctcg 61
Query: 61 acgacagagcc 71
||||||||||
Sbjct: 62 gcgacagagcc 72
>RF00763;mir-339;AAKN02032234.1/100244-100339 10141:Cavia
porcellus (domestic guinea pig)
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 7 ggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgaca 66
|||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct: 8 ggccgccctccctgtcctccaggagctcacgtatgcctgcttgtgagcgcctcgatgaca 67
Query: 67 gagccagcgcctgccccagtgtctgc 92
||||| ||| | ||| | ||||||||
Sbjct: 68 gagccggcgtccgcctctgtgtctgc 93
>RF00763;mir-339;ABVD01762426.1/789-694 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 96
Score = 85.7 bits (43), Expect = 9e-17
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
|||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||| |
Sbjct: 2 cggggccgccgctctccctgtcctccaggagctcacgtgggtctggctgtgagcgccttg 61
Query: 61 acgacagagcc 71
| | |||||||
Sbjct: 62 agggcagagcc 72
>RF00763;mir-339;AAGV020651181.1/406-501 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 96
Score = 83.8 bits (42), Expect = 4e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 8 gccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacag 67
|||||||||||||||||||||||||||||||| | | | ||||||||||||||| | |||
Sbjct: 9 gccgctctccctgtcctccaggagctcacgtgggtcaggctgtgagcgcctcgagggcag 68
Query: 68 agccagcgcctgcc 81
|||| ||| |||||
Sbjct: 69 agcccgcgtctgcc 82
>RF00763;mir-339;AAPE01244882.1/515-420 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 3 gggcggccgctctccctgtcctccaggagctcac 36
|||| |||||||||||||||||||||||||||||
Sbjct: 4 gggcagccgctctccctgtcctccaggagctcac 37
>RF00763;mir-339;ABRN01323414.1/629-534 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 96
Score = 56.0 bits (28), Expect = 8e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcac 36
|||||| |||||| ||||||||||||||||||||||
Sbjct: 2 cggggcagccgctgtccctgtcctccaggagctcac 37
>RF00763;mir-339;ABRQ01145792.1/10010-9917 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 56.0 bits (28), Expect = 8e-08
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 15 tccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacagagccagc 74
|||||||||||||||||||||||||| ||| |||||||| || ||| | ||||||| ||
Sbjct: 16 tccctgtcctccaggagctcacgtgt--ctggctgtgagccccccgagggcagagcctgc 73
Query: 75 gcctgcc 81
| |||||
Sbjct: 74 gtctgcc 80
>RF00763;mir-339;AANN01504157.1/248-341 9365:Erinaceus europaeus
(western European hedgehog)
Length = 94
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 ggggcggccgctctccctgtcctccaggagctcac 36
||||| ||||| |||||||||||||||||||||||
Sbjct: 3 ggggccgccgcgctccctgtcctccaggagctcac 37
>RF00763;mir-339;AAFC03028593.1/22710-22804 9913:Bos taurus
(cattle)
Length = 95
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 ggggcggccgctctccctgtcctccaggagctcac 36
||||| |||||| ||||||||||||||||||||||
Sbjct: 3 ggggcagccgctgtccctgtcctccaggagctcac 37
>RF00763;mir-339;AAEX02031617.1/15158-15063 9615:Canis lupus
familiaris (dog)
Length = 96
Score = 52.0 bits (26), Expect = 1e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 8 gccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcgacgacag 67
||||| ||||||||||||||||||||||| | | ||| | |||||| |||||| | |||
Sbjct: 9 gccgccctccctgtcctccaggagctcacttatatctggccgtgagctcctcgaggccag 68
Query: 68 agccagcgcctgcc 81
|||| ||| |||||
Sbjct: 69 agcccgcgtctgcc 82
>RF00763;mir-339;AAWR02040473.1/4828-4923 9796:Equus caballus
(horse)
Length = 96
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 8 gccgctctccctgtcctccaggagctcac 36
|||||| ||||||||||||||||||||||
Sbjct: 9 gccgctttccctgtcctccaggagctcac 37
>RF00763;mir-339;ABDC01170433.1/932-838 30608:Microcebus murinus
(gray mouse lemur)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 cggggcggccgctctccctgtcctccaggagctcacgtgtgcctgcctgtgagcgcctcg 60
|||||| | ||||||||| ||| ||||||||| ||||| ||| | ||| ||||| ||||
Sbjct: 2 cggggccggcgctctccccgtc-tccaggagcccacgtctgctttcctctgagcttctcg 60
Query: 61 acgacagagccagcgcc 77
||||||||||| |||||
Sbjct: 61 acgacagagccggcgcc 77
