miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00761;mir-340;AAGU02785926.1/784-687 9785:Loxodonta africana
(African savanna elephant)
Length = 98
Score = 170 bits (86), Expect = 2e-42
Identities = 92/94 (97%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 4 ttgtacctggtgtgattataaagcaatgagactgattgtcatgtgtagtttgtgggatcc 63
Query: 61 gtctcagttactttatagccatacctggtatctt 94
||||||||||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacctggtatctt 97
>RF00761;mir-340;AAYZ01269178.1/2800-2703 9978:Ochotona princeps
(American pika)
Length = 98
Score = 147 bits (74), Expect = 3e-35
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 1 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcgtttgtgggatcc 60
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 4 ttgtacctggtgtgattataaagcaatgagactgattgtcatatgtcattcatgggatcc 63
Query: 61 gtctcagttactttatagccatacct 86
||||||||||||||||||||||||||
Sbjct: 64 gtctcagttactttatagccatacct 89
>RF00761;mir-340;AANN01822792.1/1600-1511 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 tgtacctggtgtgattataaagcaatgagactg 34
|||||||||||||||||||||||| |||||||
Sbjct: 5 tgtacctggtgtgattataaagcagcgagactg 37
>RF00761;mir-340;AAFR03044187.1/7300-7390 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 13 tgattataaagcaatgagactgattgtcatat 44
|||||||||| |||||||||||||| ||||||
Sbjct: 77 tgattataaaccaatgagactgattctcatat 46
>RF00761;mir-340;ABQO010149899.1/1039-1103 9315:Macropus eugenii
(tammar wallaby)
Length = 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 16 ttataaagcaatgagactgattgtcatatgt 46
|||||||| ||||||||||||| ||||||||
Sbjct: 2 ttataaagtaatgagactgattttcatatgt 32
