miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27855_mml-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>27856_mml-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>28592_hsa-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>28593_hsa-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>30959_ppy-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>30960_ppy-mir-342:mirbase
Length = 99
Score = 186 bits (94), Expect = 2e-48
Identities = 97/98 (98%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcctactta 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcctactta 99
>27135_eca-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 4 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctc 63
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctc 64
Query: 64 acacagaaatcgcacccgtcaccttggcc 92
|||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcc 93
>27136_eca-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 4 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctc 63
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 5 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgtctc 64
Query: 64 acacagaaatcgcacccgtcaccttggcc 92
|||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcc 93
>32011_mmu-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
Query: 65 cacagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>32012_mmu-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
Query: 65 cacagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>32862_rno-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
Query: 65 cacagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>32863_rno-mir-342:mirbase
Length = 99
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggtcaatggaattgtctca 65
Query: 65 cacagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>26807_cfa-mir-342:mirbase
Length = 63
Score = 109 bits (55), Expect = 4e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 20 gggtgctatctgtgattgagggacatggctaatggaattgtctcacacagaaatcgcacc 79
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 1 gggtgctatctgtgattgagggacatggcaaatagaattgtctcacacagaaatcgcacc 60
Query: 80 cgt 82
|||
Sbjct: 61 cgt 63
>34065_ssc-mir-342:mirbase
Length = 80
Score = 105 bits (53), Expect = 6e-24
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 20 gggtgctatctgtgattgagggacatggctaatggaattgtctcacacagaaatcgcacc 79
||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 8 gggtgctatctgtgactgagggacatggcgcatagaactgtctcacacagaaatcgcacc 67
Query: 80 cgtcaccttggcc 92
|||||||||||||
Sbjct: 68 cgtcaccttggcc 80
>33330_bta-mir-342:mirbase
Length = 94
Score = 71.9 bits (36), Expect = 8e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 17 gaggggtgctatctgtgattgagggacatggctaatggaattgtctcacacagaaatcgc 76
||||||||||||||||| |||||| ||| ||| |||| || |||||||||||||||||||
Sbjct: 19 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 77
Query: 77 accc 80
||||
Sbjct: 78 accc 81
