miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00760;mir-342;ABRO01161250.1/591-689 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 99
Score = 168 bits (85), Expect = 8e-42
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 5 tgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctca 64
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6 tgggctcaaggtgaggggtgctatctgtgattgagggacatggttaatggaattgtctca 65
Query: 65 cacagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||||||||||||||
Sbjct: 66 cacagaaatcgcacccgtcaccttggcct 94
>RF00760;mir-342;AANG01132780.1/2716-2814 9685:Felis catus
(domestic cat)
Length = 99
Score = 151 bits (76), Expect = 2e-36
Identities = 88/92 (95%)
Strand = Plus / Plus
Query: 1 aaactgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgt 60
||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 2 aaactgggcgcgaggtgaggggtgctatctgtgattgagggacatggcaaatagaattgt 61
Query: 61 ctcacacagaaatcgcacccgtcaccttggcc 92
||||||||||||||||||||||||||||||||
Sbjct: 62 ctcacacagaaatcgcacccgtcaccttggcc 93
>RF00760;mir-342;AALT01532195.1/130-32 42254:Sorex araneus
(European shrew)
Length = 99
Score = 141 bits (71), Expect = 2e-33
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 4 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctc 63
|||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||
Sbjct: 5 ctgggctcaaggtgaggggtgccatctgtgactgagggacatggccaaaggaattgtctc 64
Query: 64 acacagaaatcgcacccgtcaccttgg 90
|||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttgg 91
>RF00760;mir-342;ABRQ01082244.1/3048-3146 9813:Procavia capensis
(cape rock hyrax)
Length = 99
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 6 gggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctcac 65
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 7 gggctcaaggtgaggggtgctatctgtgattgagggacatggtacatagaattgtctcac 66
Query: 66 acagaaatcgcacccgtcaccttggcct 93
|||||||||||||||||| |||||||||
Sbjct: 67 acagaaatcgcacccgtctccttggcct 94
>RF00760;mir-342;AAKN02052316.1/108279-108377 10141:Cavia
porcellus (domestic guinea pig)
Length = 99
Score = 131 bits (66), Expect = 2e-30
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 4 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctc 63
|||||| ||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct: 5 ctgggcccaaggtgaggggtgctatctgtgctggagggacatgatcaatggaattgtctc 64
Query: 64 acacagaaatcgcacccgtcaccttggcct 93
||||||||||||||||||||||||||||||
Sbjct: 65 acacagaaatcgcacccgtcaccttggcct 94
>RF00760;mir-342;AAGW01329049.1/390-486 9986:Oryctolagus cuniculus
(rabbit)
Length = 97
Score = 97.6 bits (49), Expect = 3e-20
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 4 ctgggctcaaggtgaggggtgctatctgtgattgagggacatggctaatggaattgtctc 63
|||||||| |||||||||||||| |||||| ||||||||||||| ||| ||||||||||
Sbjct: 5 ctgggctcgaggtgaggggtgctctctgtgcgtgagggacatggc-aatcgaattgtctc 63
Query: 64 acacagaaatcgcaccc 80
|||||||||||||||||
Sbjct: 64 acacagaaatcgcaccc 80
>RF00760;mir-342;AAFC03050755.1/31465-31562 9913:Bos taurus
(cattle)
Length = 98
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 17 gaggggtgctatctgtgattgagggacatggctaatggaattgtctcacacagaaatcgc 76
||||||||||||||||| |||||| ||| ||| |||| || |||||||||||||||||||
Sbjct: 18 gaggggtgctatctgtggttgagg-acacggcaaatgaaactgtctcacacagaaatcgc 76
Query: 77 accc 80
||||
Sbjct: 77 accc 80
>RF00760;mir-342;AAYZ01348637.1/771-867 9978:Ochotona princeps
(American pika)
Length = 97
Score = 71.9 bits (36), Expect = 1e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 17 gaggggtgctatctgtgattgagggacatggctaatggaattgtctcacacagaaatcgc 76
|||||||||| |||||| ||||||||||||| ||||||| ||||||||||||| |||||
Sbjct: 18 gaggggtgctctctgtgcctgagggacatggc-aatggaactgtctcacacagacatcgc 76
Query: 77 accc 80
||||
Sbjct: 77 accc 80
